View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_135 (Length: 217)

Name: NF17134_high_135
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_135
NF17134_high_135
[»] chr7 (4 HSPs)
chr7 (20-206)||(32943835-32944021)
chr7 (23-86)||(12263457-12263521)
chr7 (24-70)||(27949385-27949431)
chr7 (91-156)||(12263543-12263608)
[»] chr1 (1 HSPs)
chr1 (24-69)||(25543452-25543497)
[»] chr8 (3 HSPs)
chr8 (24-86)||(16983489-16983552)
chr8 (27-86)||(17499258-17499318)
chr8 (24-68)||(17915926-17915970)
[»] chr6 (2 HSPs)
chr6 (23-70)||(31116145-31116192)
chr6 (23-86)||(2675990-2676054)
[»] chr4 (5 HSPs)
chr4 (24-86)||(8109051-8109114)
chr4 (23-70)||(33653510-33653557)
chr4 (24-67)||(52671945-52671988)
chr4 (24-70)||(722269-722315)
chr4 (24-70)||(754602-754648)
[»] chr3 (5 HSPs)
chr3 (24-90)||(18427172-18427239)
chr3 (24-90)||(46450157-46450224)
chr3 (24-86)||(52123978-52124041)
chr3 (24-70)||(24734817-24734863)
chr3 (24-70)||(41451917-41451963)
[»] chr2 (1 HSPs)
chr2 (24-70)||(12989303-12989349)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 32943835 - 32944021
Alignment:
Q  20 catcaacactctctctaatacccactatcttattagtttatatcattgtggtctgcattttgaaaatagaagacatacattgattccattcgacaaaaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32943835 catcaacactctctctaatacccactatcttattagtttatatcattgtggtctgcattttgaaaatagaagacatacattgattccattcgacaaaaga 32943934  T
Q  120 gtggatgttatacaggatgttcaaacgtaagtgttgccaacattctttataaaataaacataaaacatctaattttttattgatttt 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  32943935 gtggatgttatacagggtgttcaaacgtaagtgttgccaacattctttataaaataaacataaaacatctaatttttcattaatttt 32944021  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 12263457 - 12263521
Alignment:
Q  23 caacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaat 86  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||| ||||| || |||||||||    
T  12263457 caacactctctctaatactcactatcttattggtttaaatcattgtgggtctacactttgaaaat 12263521  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 27949431 - 27949385
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||||    
T  27949431 aacactctctctaatactcactctcttattagtttaaatcattgtgg 27949385  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 12263543 - 12263608
Alignment:
Q  91 gacatacattgattccattcgacaaaagagtggatgttatacaggatgttcaaacgtaagtgttgc 156  Q
    |||||||||||||||||| ||| ||||||||||||| || | ||  |||| ||| |||||||||||    
T  12263543 gacatacattgattccatccgataaaagagtggatgatagagagagtgttgaaaagtaagtgttgc 12263608  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 25543497 - 25543452
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtg 69  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||    
T  25543497 aacactctctctaatactcactatcttattggtttaaatcattgtg 25543452  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 16983552 - 16983489
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtg-gtctgcattttgaaaat 86  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||| |||| || |||||||||    
T  16983552 aacactctctctaatactcactctcttattggtttaaatcattgtgagtctacactttgaaaat 16983489  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 17499258 - 17499318
Alignment:
Q  27 actctctctaatacccactatcttattagtttatatcattgtgg-tctgcattttgaaaat 86  Q
    |||||||||||||| |||| ||||||| ||||| |||||||||| ||| || |||||||||    
T  17499258 actctctctaatactcactctcttattggtttaaatcattgtggatctacactttgaaaat 17499318  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 17915970 - 17915926
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgt 68  Q
    ||||||||||||||||| |||| | ||||||||||| ||||||||    
T  17915970 aacactctctctaatactcactttattattagtttaaatcattgt 17915926  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 31116145 - 31116192
Alignment:
Q  23 caacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    |||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  31116145 caacactctctctaatactcactctcttattggtttaaatcattgtgg 31116192  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 2676054 - 2675990
Alignment:
Q  23 caacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaat 86  Q
    |||||||||||||||||| |||| | ||||| ||||| | |||||| ||||| ||||||||||||    
T  2676054 caacactctctctaatactcacttttttattggtttaaaccattgtgggtctacattttgaaaat 2675990  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 8109114 - 8109051
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaat 86  Q
    ||||||||||||||||| |||| ||||||| ||||| |||||||| ||||| || |||||||||    
T  8109114 aacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaat 8109051  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 33653510 - 33653557
Alignment:
Q  23 caacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    |||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  33653510 caacactctctctaatactcactttcttattggtttaaatcattgtgg 33653557  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 52671988 - 52671945
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattg 67  Q
    |||||||||| |||||| |||||||||||||||||| |||||||    
T  52671988 aacactctctttaatactcactatcttattagtttaaatcattg 52671945  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 722315 - 722269
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  722315 aacactctctctaatactcactctcttattggtttaaatcattgtgg 722269  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 754602 - 754648
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  754602 aacactctctctaatactcactctcttattggtttaaatcattgtgg 754648  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 18427172 - 18427239
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaatagaa 90  Q
    ||||| ||||||||||| |||| ||||||| ||||| |||||||| ||||| || |||||||||||||    
T  18427172 aacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgaaaatagaa 18427239  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 90
Target Start/End: Complemental strand, 46450224 - 46450157
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaatagaa 90  Q
    ||||||||||||||||| |||| ||||||| ||||| |||||||| ||||| || |||| ||||||||    
T  46450224 aacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactttgcaaatagaa 46450157  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 52123978 - 52124041
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgt-ggtctgcattttgaaaat 86  Q
    ||||||||||||||||| |||| ||||||| ||||| |||||||| ||||| || |||||||||    
T  52123978 aacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactttgaaaat 52124041  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 24734863 - 24734817
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  24734863 aacactctctctaatactcactctcttattggtttaaatcattgtgg 24734817  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 41451917 - 41451963
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  41451917 aacactctctctaatactcactctcttattggtttaaatcattgtgg 41451963  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 12989349 - 12989303
Alignment:
Q  24 aacactctctctaatacccactatcttattagtttatatcattgtgg 70  Q
    ||||||||||||||||| |||| ||||||| ||||| ||||||||||    
T  12989349 aacactctctctaatactcactctcttattggtttaaatcattgtgg 12989303  T

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