View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_139 (Length: 212)
Name: NF17134_high_139
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_139 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 23800332 - 23800148
Alignment:
| Q |
15 |
aaaataaaattgatacaaaaaatgcaatattctggtttggtgaagaaatacaaggttggagagaatgggttgtagattcaactcgttaccaatctaatgg |
114 |
Q |
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| T |
23800332 |
aaaaaaaaatttatacaaaaaatgcaatattttggtttggtgaagaaatacaaggttggagagaatgggttgtagattcaactcgttaccaatctaacgg |
23800233 |
T |
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| Q |
115 |
atttaactcctttttaagtcttcaccccaatcaacccacacctctcttatactatttaacaattattatacataaagttatatgt |
199 |
Q |
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| T |
23800232 |
atttaactcctttttaagtcttcaccccaatcaacccacacctctcttatactatttaacaattattatacataaagttacatgt |
23800148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 23815161 - 23815124
Alignment:
| Q |
122 |
tcctttttaagtcttcaccccaatcaacccacacctct |
159 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| |
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| T |
23815161 |
tcctttctaagtcttcaccccagtcaacccacacctct |
23815124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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