View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_2 (Length: 790)

Name: NF17134_high_2
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_2
NF17134_high_2
[»] chr5 (3 HSPs)
chr5 (211-776)||(23171475-23172038)
chr5 (25-192)||(23171270-23171437)
chr5 (548-666)||(23220268-23220386)
[»] chr8 (6 HSPs)
chr8 (276-409)||(39460796-39460929)
chr8 (302-414)||(30873412-30873526)
chr8 (319-406)||(9208650-9208738)
chr8 (301-356)||(25128164-25128219)
chr8 (299-356)||(1282917-1282973)
chr8 (319-356)||(37437843-37437880)
[»] chr4 (2 HSPs)
chr4 (277-409)||(27587691-27587823)
chr4 (308-349)||(28038093-28038134)
[»] scaffold0018 (1 HSPs)
scaffold0018 (301-409)||(30178-30288)
[»] chr7 (4 HSPs)
chr7 (287-390)||(39586500-39586603)
chr7 (319-409)||(16664493-16664585)
chr7 (319-409)||(17638863-17638955)
chr7 (307-380)||(6455459-6455533)
[»] chr2 (2 HSPs)
chr2 (323-409)||(22302387-22302476)
chr2 (319-356)||(13913847-13913884)
[»] chr1 (3 HSPs)
chr1 (287-356)||(17606161-17606228)
chr1 (308-356)||(14188514-14188562)
chr1 (319-356)||(14485497-14485534)
[»] chr3 (2 HSPs)
chr3 (282-399)||(49785829-49785946)
chr3 (365-409)||(55273466-55273511)
[»] scaffold0013 (1 HSPs)
scaffold0013 (319-405)||(94447-94535)
[»] chr6 (1 HSPs)
chr6 (308-380)||(19986837-19986910)


Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 211 - 776
Target Start/End: Original strand, 23171475 - 23172038
Alignment:
Q  211 aaaagaaaaatagaattatagagatccaataaatataatttttctctgattcaaccagnnnnnnntatgaaggtctaagttagcaagtgtgtgcatcttt 310  Q
    ||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||       |||||||||||||| ||||||||| |  |||||||    
T  23171475 aaaagaacaatagaattatagagacccaataaataaaatttgtctctgattcaaccagaaaaaaatatgaaggtctaagctagcaagtgcg--catcttt 23171572  T
Q  311 ttattggaacaaaaatatcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171573 ttattggaacaaaaatatcattcatctatattatttaaaactaatacatggggtttactttaataattttattataaaatatttgttaaattgcaccaaa 23171672  T
Q  411 ttacagtaatattaatggccgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactccacactaa 510  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171673 ttacagtaatattaatggctgtgaacacgacatttatagatctaaaagacgttttattttcatcattggatatataaatataacgtccactccacactaa 23171772  T
Q  511 atattacacaatacgtgcaatttgtaccctnnnnnnntgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccat 610  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23171773 atattacacaatacgtgcaatttgtaccctaaaaaaatgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccat 23171872  T
Q  611 ttctcctccatactacgtcgtctcacctctccggtaaatctcccacctttccgttttccagaaggccgtttaagccacctgcactccggtcaattctccc 710  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||    
T  23171873 ttctccttcatactacgtcgtctcacctctccggtaaatctcccacctctccgttttcgagaaggtcgtttaacccacctgcactccggtcaattctccc 23171972  T
Q  711 cgtgagtaccagctcttctctacaactcgtcgatatcaacgagagcaaaaggtacatgtaatttct 776  Q
     | |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  23171973 tgcgagtaccagctcttctttacaactcttcgatgtcaacgagagcaaaaggtacatgtaatttct 23172038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 23171270 - 23171437
Alignment:
Q  25 taaaagagttaagagcatcgataatggtagtaaattaaaaaagatatttaaacgaattttacatgtacacatttatttatgattt--aaaaagaaaaatc 122  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||  ||||| |||||||    
T  23171270 taaaagagtta-gagcatcgataatggtagtaaattaaaaatgatctttaaacgaattttacatgtatacatttatttatgatttaaaaaaaaaaaaatc 23171368  T
Q  123 tatcaaggactcaataactttaattatagtaaattaaaaataatacttaaatagatccactaatatatgc 192  Q
    |||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  23171369 tatcaaggactcaataacttcaattataataaactaaaaat-atacttaaatagatccactaatatatgc 23171437  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 548 - 666
Target Start/End: Original strand, 23220268 - 23220386
Alignment:
Q  548 tgttgcatctattttcatttccttgctccaaccctgcttctaccacaaccttcacttccccatttctcctccatactacgtcgtctcacctctccggtaa 647  Q
    ||||||| | ||||||||||| ||||||||||| ||||||||||||| | ||  |||||  ||| |||||| |||||||||||| ||||||| | |||||    
T  23220268 tgttgcacccattttcatttcgttgctccaaccatgcttctaccacaccgtttccttccttattactcctcaatactacgtcgtttcacctcgcaggtaa 23220367  T
Q  648 atctcccacctttccgttt 666  Q
    ||||||||| || ||||||    
T  23220368 atctcccactttcccgttt 23220386  T

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Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 276 - 409
Target Start/End: Complemental strand, 39460929 - 39460796
Alignment:
Q  276 tatgaaggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaat 374  Q
    |||||||||| ||||||||||  |||  || ||||||||| | ||||||||||| ||||||| |||||||||||||||||| | || || |||||||| |    
T  39460929 tatgaaggtccaagttagcaaaagtg--cacctttttatttggacaaaaatatccttcatctttattatttaaaactaatagcttgagggttactttagt 39460832  T
Q  375 aatttt-attataaaatatttgttaaattgcaccaa 409  Q
    |||||| |||| || | ||||||||| |||||||||    
T  39460831 aattttcattaaaacagatttgttaacttgcaccaa 39460796  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 302 - 414
Target Start/End: Original strand, 30873412 - 30873526
Alignment:
Q  302 tgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaa 399  Q
    ||||| |||||||| | ||||||||||| ||||||| |||||||||||| |||||   || || |||||||| ||||||| |||| || |||||||||||    
T  30873412 tgcatttttttatttggacaaaaatatctttcatctttattatttaaaattaatagtttgagggttactttagtaattttcattaaaacatatttgttaa 30873511  T
Q  400 attgcaccaaattac 414  Q
     ||||||||| ||||    
T  30873512 cttgcaccaatttac 30873526  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 9208650 - 9208738
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataattttattataaaatatttgttaaattgcac 406  Q
    ||||| ||||| ||||||| |||||||||||||||||| |  | || |||||||| |||||| |||| || ||||||||||| ||||||    
T  9208650 acaaagatatccttcatctttattatttaaaactaatagctagagggttactttagtaatttcattaaaacatatttgttaatttgcac 9208738  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 25128164 - 25128219
Alignment:
Q  301 gtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 356  Q
    ||||| ||||| ||| | |||||||||||||| |||| ||||||||||||||||||    
T  25128164 gtgcaccttttcatttggacaaaaatatcattaatctttattatttaaaactaata 25128219  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 1282917 - 1282973
Alignment:
Q  299 gtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 356  Q
    |||||| | |||||||| ||||||||| ||||||||||| |||| |||||||||||||    
T  1282917 gtgtgcctatttttatttgaacaaaaa-atcattcatctttattttttaaaactaata 1282973  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 37437880 - 37437843
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata 356  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  37437880 acaaaaataccattcatctttattatttaaaactaata 37437843  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 409
Target Start/End: Complemental strand, 27587823 - 27587691
Alignment:
Q  277 atgaaggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaata 375  Q
    ||||||||| ||||||||||  |||| |  ||||||||  | ||||||||||| || || |||||||||||||||||||| | || || |||||||| ||    
T  27587823 atgaaggtccaagttagcaaaagtgtcc--ctttttatatggacaaaaatatcctttatttatattatttaaaactaatagcttgagggttactttagta 27587726  T
Q  376 atttt-attataaaatatttgttaaattgcaccaa 409  Q
    ||||| |||| || ||||||||||| |||||||||    
T  27587725 attttcattaaaacatatttgttaatttgcaccaa 27587691  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 28038093 - 28038134
Alignment:
Q  308 tttttattggaacaaaaatatcattcatctatattatttaaa 349  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  28038093 tttttatttggacaaaaatatcattcatctttattatttaaa 28038134  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 30178 - 30288
Alignment:
Q  301 gtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgtta 398  Q
    ||||| ||||| ||| | ||||||||||| ||||||| |||||||||||||||||| | || |  |||||||| ||||||| |||| || ||||||||||    
T  30178 gtgcaccttttcatttggacaaaaatatccttcatctttattatttaaaactaatagcttgagcgttactttagtaattttcattaaaacatatttgtta 30277  T
Q  399 aattgcaccaa 409  Q
    | |||||||||    
T  30278 acttgcaccaa 30288  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 390
Target Start/End: Complemental strand, 39586603 - 39586500
Alignment:
Q  287 aagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaat-acatggggtttactttaataa-ttttatta 384  Q
    ||||||||||||||   || ||||| ||| | ||||||||||||||||||| ||||||||||||||||| || || || |||||||| ||| ||||||||    
T  39586603 aagttagcaagtgtt--caccttttcatttggacaaaaatatcattcatctttattatttaaaactaataacttgagggttactttagtaatttttatta 39586506  T
Q  385 taaaat 390  Q
    ||||||    
T  39586505 taaaat 39586500  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 16664493 - 16664585
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa 409  Q
    ||||||||| | ||||||| ||||||| |||||||||| | || || |||||||||||| |||||| ||||||||||||||||  ||||||||    
T  16664493 acaaaaataaccttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa 16664585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 409
Target Start/End: Original strand, 17638863 - 17638955
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataa-ttttattataaaatatttgttaaattgcaccaa 409  Q
    ||||||||| | ||||||| ||||||| |||||||||| | || || |||||||||||| |||||| ||||||||||||||||  ||||||||    
T  17638863 acaaaaataaccttcatctttattattaaaaactaatagcttgagggttactttaataacttttatgataaaatatttgttaatctgcaccaa 17638955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 6455459 - 6455533
Alignment:
Q  307 ctttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt 380  Q
    ||||||||| | ||||||||||| ||||||| |||||||||||||||||| | || || |||||||| |||||||    
T  6455459 ctttttatttggacaaaaatatccttcatctttattatttaaaactaatagcttgaggattactttagtaatttt 6455533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 323 - 409
Target Start/End: Complemental strand, 22302476 - 22302387
Alignment:
Q  323 aaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt--attataaaatatttgttaaattgcaccaa 409  Q
    ||||||||||||||| |||||||||||||||||| | || || |||||||| |||||||  |||| || ||||||||||| |||||||||    
T  22302476 aaatatcattcatctttattatttaaaactaatagcttgagggttactttagtaattttgcattaaaacatatttgttaacttgcaccaa 22302387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Complemental strand, 13913884 - 13913847
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata 356  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13913884 acaaaaatatcattcatctttattatttaaaactaata 13913847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 287 - 356
Target Start/End: Complemental strand, 17606228 - 17606161
Alignment:
Q  287 aagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaata 356  Q
    |||||||||||||||   ||||||||||| | ||||||||| ||||||||| ||||||||||||||||||    
T  17606228 aagttagcaagtgtga--atctttttatttggacaaaaataccattcatctttattatttaaaactaata 17606161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 14188562 - 14188514
Alignment:
Q  308 tttttattggaacaaaaatatcattcatctatattatttaaaactaata 356  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  14188562 tttttatttggacaaaaatatcattcatctttattatttaaaactaata 14188514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 14485497 - 14485534
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata 356  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14485497 acaaaaatatcattcatctttattatttaaaactaata 14485534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 399
Target Start/End: Original strand, 49785829 - 49785946
Alignment:
Q  282 ggtctaagttagcaagtgtgtgcatctttttattggaacaaaaatatcattcatctatattatttaaaactaat-acatggggtttactttaataatttt 380  Q
    ||||||||||||||| ||||  || ||||| | | | ||||||||||||||||||| |||||||||||| |||| || ||  | ||| |||| |||||||    
T  49785829 ggtctaagttagcaaatgtg--caccttttcaattggacaaaaatatcattcatctttattatttaaaattaataacgtgaaggttaatttagtaatttt 49785926  T
Q  381 -attataaaatatttgttaa 399  Q
     |||||||||||||||||||    
T  49785927 cattataaaatatttgttaa 49785946  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 409
Target Start/End: Complemental strand, 55273511 - 55273466
Alignment:
Q  365 ttactttaataatttt-attataaaatatttgttaaattgcaccaa 409  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||||    
T  55273511 ttactttagtaatttttattataaaatatttgttaagttgcaccaa 55273466  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 405
Target Start/End: Complemental strand, 94535 - 94447
Alignment:
Q  319 acaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt-attataaaatatttgttaaattgca 405  Q
    ||||||||||| ||||||| ||||||||||||||||||   || |  |||||||||||||||| |||| || ||||||||||| |||||    
T  94535 acaaaaatatccttcatctttattatttaaaactaatagtttgagagttactttaataattttcattaaaacatatttgttaacttgca 94447  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 380
Target Start/End: Complemental strand, 19986910 - 19986837
Alignment:
Q  308 tttttattggaacaaaaatatcattcatctatattatttaaaactaata-catggggtttactttaataatttt 380  Q
    |||||||| | ||||||||| ||||||||  |||||||||||||||||| | || || |||| |||||||||||    
T  19986910 tttttatttggacaaaaataacattcatcattattatttaaaactaatagcttgagggttacattaataatttt 19986837  T

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