View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_24 (Length: 485)
Name: NF17134_high_24
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 28587412 - 28586943
Alignment:
| Q |
1 |
ggaaagcaagaatttgttgcttcactgcgaaggtttgaatgagctagcctattatattatcagcactacaattcaatgcctcacctaaaattgtaattct |
100 |
Q |
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| T |
28587412 |
ggaaagcaagaatttgttgcttcactgcgaaggtttgaatgagctagcctattatattatcagcactataattcaatgcctcacctaaaattgtaattct |
28587313 |
T |
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| Q |
101 |
tctgcttgcaggacaagcactggtttttcgaggggagcttccaagtacaggggtgttacaaggtttgaaatttgaaacaatagattactaatatgatacc |
200 |
Q |
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| T |
28587312 |
tctgcttgcaggacaagcactggtttttcgaggggagcttccaagtacaggggtgttacaaggtttgaaatttgaaacaatagattactagtatgatacc |
28587213 |
T |
|
| Q |
201 |
gatttatttgaaacaacatattgttctcgtgtatctctcatgttttgttctttggatcctgaaggcaccatcaacaggatcgatggcaagcaagaattgg |
300 |
Q |
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| T |
28587212 |
gatttatttgaaacaacatattgttctcgtgtatctctcatgttttgttctttggatccttaaggcaccatcaacaggatcgatggcaagcaagaattgg |
28587113 |
T |
|
| Q |
301 |
tcgagttgctggaaacaaagatctatacttgggaacatatggtaaacgtttaccttttcttgttaacttttctattttataaaatatgattggatttagt |
400 |
Q |
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| T |
28587112 |
tcgagttgctggaaacaaagatctatacttgggaacatatggtaaacgtttacctattcttgttaacttttctattttataaaatatgattggatttagt |
28587013 |
T |
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| Q |
401 |
gaaatgatagtatgagtgtatgacaccattagctttaatctactcatatattttaccaatctccccatat |
470 |
Q |
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| T |
28587012 |
gaaatgatagtatgagtgtatgacaccattaactttaatctactgatatattttaccaatctccccatat |
28586943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 41964271 - 41964206
Alignment:
| Q |
282 |
gatggcaagcaagaattggtcgagttgctggaaacaaagatctatacttgggaacatatggtaaac |
347 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| | |||||||| |
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| T |
41964271 |
gatggcaagcaagaattggtcgagtcgcgggaaacaaagatctttacttaggaacttttggtaaac |
41964206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 336
Target Start/End: Complemental strand, 24562170 - 24562116
Alignment:
| Q |
282 |
gatggcaagcaagaattggtcgagttgctggaaacaaagatctatacttgggaac |
336 |
Q |
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| T |
24562170 |
gatggcaagcaaggattggcagagttgcaggaaataaagatctatacttgggaac |
24562116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 13681333 - 13681263
Alignment:
| Q |
251 |
tttggatcctgaaggcaccatcaacaggatcgatggcaagcaagaattggtcgagttgctggaaacaaaga |
321 |
Q |
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| T |
13681333 |
tttggttcctgcaggcatcaccaacagggtaggtggcaagcaagaattggtcgtgttgccgggaacaaaga |
13681263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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