View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_27 (Length: 477)
Name: NF17134_high_27
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_27 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 23 - 477
Target Start/End: Complemental strand, 3653906 - 3653452
Alignment:
| Q |
23 |
aacggggcctacggcttagcctacaacaggtcagatcagatcaaacnnnnnnnncttaaatagagaatgtctagannnnnnn-aagtctatttagtttaa |
121 |
Q |
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| T |
3653906 |
aacggggcctacgacctagcctacaataggtcagatcagatcaaacttttttt-cttaaatagagaatgtctagattttttttaagtctatttagtttaa |
3653808 |
T |
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| Q |
122 |
taggacatgccacaaaccaatcaaaaaactccttaaacctattaggccgatctattaggccagacttatgctttaaaaatgtttggcatgacagatttag |
221 |
Q |
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| T |
3653807 |
taggtcatgccacaaaccaatcaaaaaactccttaaacctattaggccgatctattaggccagacttatgctttaaaaatgtttggcatgacagatttag |
3653708 |
T |
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| Q |
222 |
gccttgcaaagcctagttcggtttagcccattctcatctgtatgtacaagctagctagccacgtataataaataattgatactacaagaaaaatcaatat |
321 |
Q |
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| T |
3653707 |
gccttgcaaagcctagttcggtttagcccattctcatctgtatgtacaagctagctagccacgtataataaataattgatactacaagaaaaatcaatat |
3653608 |
T |
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| Q |
322 |
tttctagaaaacaagttgaaaaaatcctcaaatttttgctatatatacttatgggtcgtgggctaaagtttcatatgccaataacttctagctagttaga |
421 |
Q |
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| T |
3653607 |
tttctagaaaacaagttgaaaaaatcctcaaatttttgctatatatacttatgggtcgtgggctaaagtttcatatgccaataacttctagctagttaga |
3653508 |
T |
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| Q |
422 |
gctacaatattatatcatagctattggtgttaatatatcatcctatttcaatgtct |
477 |
Q |
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| T |
3653507 |
gctacaatattatatcatagctattggtgttaatatatcatcctatttcaatgtct |
3653452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 259
Target Start/End: Complemental strand, 52426184 - 52426138
Alignment:
| Q |
213 |
cagatttaggccttgcaaagcctagttcggtttagcccattctcatc |
259 |
Q |
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| T |
52426184 |
cagacttaggccttgcaaagcctagctcggcttagcctattctcatc |
52426138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 38556687 - 38556768
Alignment:
| Q |
178 |
aggccagacttatgctttaaaaatgtttggcatgacagatttaggccttgcaaagcctagttcggtttagcccattctcatc |
259 |
Q |
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| T |
38556687 |
aggccagacttaagctttaaaaaaatatggcaggtcagacttaggccttgcaaagcctaactcggcttagcctattcccatc |
38556768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 26243951 - 26243986
Alignment:
| Q |
26 |
ggggcctacggcttagcctacaacaggtcagatcag |
61 |
Q |
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| T |
26243951 |
ggggcctacggcttagcctacgacaggtcagatcag |
26243986 |
T |
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