View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_31 (Length: 452)
Name: NF17134_high_31
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 43916236 - 43915811
Alignment:
| Q |
19 |
gatataatatttggaacatgatatattagcctaactatacaaaggctgcctttgatctgtactatgtatagctagctatctcacactatgatgaacctaa |
118 |
Q |
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| T |
43916236 |
gatataatatttggaacatgatatattaacctaactatacaaaggctgcctttgatctgtactatgtatagctagctatctcacactatgatgaacctaa |
43916137 |
T |
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| Q |
119 |
cattttcattcttgccagttgccactcttgaagttgttgtatctgaactaggtacgcggtgaagttatattatctctaaagtgaacaaatatggttattt |
218 |
Q |
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| T |
43916136 |
cattttcattcttgccagttgccactcttgaagttgttgtatctgaactaggtacgcggtgaagttatattatctctaaagtgaacaaatatggttattt |
43916037 |
T |
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| Q |
219 |
tttatccttcaattttggtgtgttaagaccacaatgcacataaggatgaaaacactcttgtacacttagagataaattcactttggaacttcgtatatat |
318 |
Q |
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| T |
43916036 |
tttatccttcaattttggtgtgttaagaccacaatgcacataaggatgaaaacactcttgtacacttagagataaattcactttggaacttcgtatatat |
43915937 |
T |
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| Q |
319 |
gatgtagcaagtctattgttctgcgctctagaataaggaaagaatgcactgtattttttgtaaaatgatcgttacgcattatcttgacaatcttgttaaa |
418 |
Q |
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| T |
43915936 |
gatgtagcaagtctattgttctgcgctctagaataaggaaagaatgcactgtattttttgtaaaatgatggttacgcattatcttgacaatcttgttaaa |
43915837 |
T |
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| Q |
419 |
atttaacattgctgtgaacttcatct |
444 |
Q |
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| T |
43915836 |
atttaacattgctgtgaacttcatct |
43915811 |
T |
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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 53103683 - 53103607
Alignment:
| Q |
19 |
gatataatatttggaacatgatatattagcctaactatacaaaggctgcctttgatctgtactatgtatagctagcta |
96 |
Q |
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| T |
53103683 |
gatataatatttggaacatg-tatattagcctaaccatacaaaggctacctttgatctgtactatgtatagctagcta |
53103607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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