View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_34 (Length: 450)
Name: NF17134_high_34
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 2114222 - 2114664
Alignment:
| Q |
1 |
ccaccattcctcttcactctcaagattatcaattatcaacaagtaaggtgtatcaccaaaaagctccctcttgattctcttgaatgcttcgagttcctgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2114222 |
ccaccattcctcttcactctcaagattatcaattatcaacaagtaaggtgtatcaccaaaaagctccctcttgattctcttgaatgcttcgagttcctgc |
2114321 |
T |
|
| Q |
101 |
tcttcaaagctgcgaattcgacccctttcaatctcggaatcagcaccaacatccaaaccgaaatttcgtgacaagttcaatatgttctgtctaaaattcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2114322 |
tcttcaaagctgcgaattcgacccctttcaatctcggaatcagcaccaacatccaaaccgaaatttcgtgacaagttcaatatgttctgtctaaaattcc |
2114421 |
T |
|
| Q |
201 |
tagcttcaccaccaatccacaaaaccatcttgtacctttggtaatatctatgagcaaattctaatgccaattcagattttccaattccagaaactccgct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2114422 |
tagcttcaccaccaatccacaaaaccatcttgtacctttggtaatatctatgagcaaattctaatgccaattcagattttccaattccagaaactccgct |
2114521 |
T |
|
| Q |
301 |
aatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatcatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2114522 |
aatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacttcttattcttcaatctcttcaatgaactgttacctatcatc |
2114621 |
T |
|
| Q |
401 |
ggttgttcaatccaagcctctaaatttggttctctgctcctcc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
2114622 |
ggttgttcaatccaagcctctaaatttggttctttgttcctcc |
2114664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University