View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_35 (Length: 424)
Name: NF17134_high_35
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 37800009 - 37799615
Alignment:
| Q |
13 |
ataatactcgaaatgtttggatgatgtgatggaaatctcatattccactaaaattagatctttttcataagtggaaacttgctaggccaacttaaatgat |
112 |
Q |
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| T |
37800009 |
ataatactcgaaatgtttggatgatgtgatggaaatctcatattccactaaaattagatctttttcataagtggaaacttgctgggccaacttaaattat |
37799910 |
T |
|
| Q |
113 |
tatttaataattgatattgtttttgttaatatgcatgcatgctgtcttatacttgtacttaaacaatacaaaagacatttacataaaggaaagttgaacn |
212 |
Q |
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| T |
37799909 |
tatttaataattgatattgtttttgtgaatatgcatgc----tgtcttatacttgtacttaaacaatacaaaagacatttacataaaggaaagttgaaca |
37799814 |
T |
|
| Q |
213 |
nnnnnntaa---tatgcaagctgctttactacattgaggcgacataagaaacatttgcttgttaagaaagatttattttcgcgataagctgcaaagactc |
309 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37799813 |
aaaaaataaaaatatgcgagctgctttactacattgaggcgacataagaaacatttgcttgttaagaaagatttattttcgcgataagctgcaaagactc |
37799714 |
T |
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| Q |
310 |
actgattttgtgacggagagctcaatacccaatttttcatgcattggcctcgtctacaaggaagcaaggttttaaaaaatgggatgataccgtaaaaac |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37799713 |
actgattttgtgacggagagctcaatacccaatttttcatgcattggcctcgtctacaaggaagcaaggttttaaaaaacgggatgataccgtaaaaac |
37799615 |
T |
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