View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_38 (Length: 419)
Name: NF17134_high_38
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 51 - 405
Target Start/End: Original strand, 52315740 - 52316093
Alignment:
| Q |
51 |
catcatgctctccaatgttgtgtttagtattatggttttgaaacaattgtttgagtgatggcctattttgcaaacatgcattaatataaatgagggtgtt |
150 |
Q |
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| T |
52315740 |
catcatgctctccaatgttgtgtttagtattatggttttgaaacaattgtttgagtgatggcctattttgtgaacatgcattaatataaatgagggtgtt |
52315839 |
T |
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| Q |
151 |
cagtttaccatttggcataaatcctgacagtagttttatttgacagttgtggtgatgatgggcggattcaaggatggagatggaaggaacttacaagctt |
250 |
Q |
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| T |
52315840 |
cagtttaccatttggcataaatcctgacagtagttttatttgacagttgtggtgatgatgggcggattcaaggatggagatggaaggaacttacaagctt |
52315939 |
T |
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| Q |
251 |
caagtatactatttcttcagaaggtaataatatgttacagttgtgatagaaattcaaatcagttcatccattttgatctcttttatttctctgaagcaac |
350 |
Q |
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| T |
52315940 |
caagtatactatttcttcagaaggtaataatatgttacagttgtgatagaaattcaaatcagttcatccattttgatctcttttatttctctgaagcaac |
52316039 |
T |
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| Q |
351 |
ttacatctctatttttctctccctgattattgcatgaagattgtatatgtctgtg |
405 |
Q |
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| T |
52316040 |
ttacatctctatttttctctccctgattattgcatgaag-ttgtatatgtctgtg |
52316093 |
T |
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