View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_39 (Length: 416)

Name: NF17134_high_39
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_39
NF17134_high_39
[»] chr8 (6 HSPs)
chr8 (77-399)||(20225556-20225876)
chr8 (39-74)||(5328513-5328548)
chr8 (39-74)||(21548443-21548478)
chr8 (39-70)||(29729212-29729243)
chr8 (41-74)||(2908040-2908073)
chr8 (41-74)||(9735792-9735825)
[»] chr7 (5 HSPs)
chr7 (77-399)||(44310068-44310388)
chr7 (39-70)||(45640038-45640069)
chr7 (40-70)||(34267498-34267528)
chr7 (40-72)||(10901736-10901768)
chr7 (39-71)||(12364840-12364872)
[»] chr5 (5 HSPs)
chr5 (39-70)||(6558894-6558925)
chr5 (39-70)||(21918145-21918176)
chr5 (40-70)||(24133049-24133079)
chr5 (39-69)||(41156422-41156452)
chr5 (41-74)||(18597497-18597530)
[»] chr4 (4 HSPs)
chr4 (39-70)||(48615418-48615449)
chr4 (39-73)||(2688185-2688219)
chr4 (40-70)||(42231605-42231635)
chr4 (40-70)||(54029646-54029676)
[»] chr3 (3 HSPs)
chr3 (39-70)||(5636745-5636776)
chr3 (40-74)||(9114100-9114134)
chr3 (40-70)||(25833915-25833945)
[»] chr2 (2 HSPs)
chr2 (40-74)||(18862341-18862375)
chr2 (41-73)||(42480196-42480228)
[»] chr1 (2 HSPs)
chr1 (40-70)||(1151852-1151882)
chr1 (40-70)||(7180561-7180591)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 399
Target Start/End: Original strand, 20225556 - 20225876
Alignment:
Q  77 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20225556 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 20225655  T
Q  177 actaatttttgctaataactaagacttgttctttgtattaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20225656 actaatttttgctaataactaagacttgttctttgtcttaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 20225755  T
Q  277 attgtatatttggcatgtcgagtgtcgtcgattcaaattcatttttgctcacccatgtcgacacaacgcatataaacatcttgcacatgttgaggtctgg 376  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||| ||| |||||||  |||||||||| |||    
T  20225756 attgtatatttggcatgtcgagtgtcgac-attcaaattcatttttgctcacccatgtcgacaccgcacatagaaaaatcttgccgatgttgaggtatgg 20225854  T
Q  377 gggctgataccatacttgattta 399  Q
    ||| || |||||||||| |||||    
T  20225855 gggatg-taccatacttaattta 20225876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 5328513 - 5328548
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5328513 ggtcaagtagcctagtggctagagctcacacatttt 5328548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 21548443 - 21548478
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21548443 ggtcaagtagcctagtggctagagctcacacatttt 21548478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 29729243 - 29729212
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  29729243 ggtcaagtagcctagtgactagagctcacaca 29729212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 2908040 - 2908073
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  2908040 tcaagtagcctagtggctagagctcacacatttt 2908073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 9735825 - 9735792
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||| ||||||||||||||||||||||||    
T  9735825 tcaagtagcatagtgactagagctcacacatttt 9735792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 77 - 399
Target Start/End: Original strand, 44310068 - 44310388
Alignment:
Q  77 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44310068 ttaatttaatattgtttattgtcgctcatctctgaattagtccatgaaatgtgttaaatcaattttaaaagtttaaccttataattttaagtgacgtatc 44310167  T
Q  177 actaatttttgctaataactaagacttgttctttgtattaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 276  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44310168 actaatttttgctaataactaagacttgttctttgtcttaatcttttgccaagtgaggttgctcaaatatcacaaaacctcaattacaaaccattgcgta 44310267  T
Q  277 attgtatatttggcatgtcgagtgtcgtcgattcaaattcatttttgctcacccatgtcgacacaacgcatataaacatcttgcacatgttgaggtctgg 376  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  | |||| ||| |||||||  |||||||||| |||    
T  44310268 attgtatatttggcatgtcgagtgtcgac-attcaaattcatttttgctcacccatgtcgacaccgcacatagaaaaatcttgccgatgttgaggtatgg 44310366  T
Q  377 gggctgataccatacttgattta 399  Q
    ||| || |||||||||| |||||    
T  44310367 gggatg-taccatacttaattta 44310388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 45640038 - 45640069
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  45640038 ggtcaagtagcctagtgactagagctcacaca 45640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 34267498 - 34267528
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  34267498 gtcaagtagcctagtgactagagctcacaca 34267528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10901768 - 10901736
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatt 72  Q
    ||||||||||||||||||| |||||||||||||    
T  10901768 gtcaagtagcctagtgactggagctcacacatt 10901736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 12364872 - 12364840
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacat 71  Q
    ||||||||||||||||| |||||||||||||||    
T  12364872 ggtcaagtagcctagtggctagagctcacacat 12364840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 6558925 - 6558894
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  6558925 ggtcaagtagcctagtgactagagctcacaca 6558894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 21918176 - 21918145
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  21918176 ggtcaagtagcctagtgactagagctcacaca 21918145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 24133079 - 24133049
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  24133079 gtcaagtagcctagtgactagagctcacaca 24133049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 41156452 - 41156422
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacac 69  Q
    |||||||||||||||||||||||||||||||    
T  41156452 ggtcaagtagcctagtgactagagctcacac 41156422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 18597530 - 18597497
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||| ||||||||||||||||||    
T  18597530 tcaagtagcctagtggctagagctcacacatttt 18597497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 48615418 - 48615449
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  48615418 ggtcaagtagcctagtgactagagctcacaca 48615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 2688219 - 2688185
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacacattt 73  Q
    ||||||||||||||||| |||||||||||||||||    
T  2688219 ggtcaagtagcctagtggctagagctcacacattt 2688185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 42231635 - 42231605
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  42231635 gtcaagtagcctagtgactagagctcacaca 42231605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 54029676 - 54029646
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  54029676 gtcaagtagcctagtgactagagctcacaca 54029646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 5636745 - 5636776
Alignment:
Q  39 ggtcaagtagcctagtgactagagctcacaca 70  Q
    ||||||||||||||||||||||||||||||||    
T  5636745 ggtcaagtagcctagtgactagagctcacaca 5636776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 9114134 - 9114100
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatttt 74  Q
    ||||||||||||||||||| |||||||||||||||    
T  9114134 gtcaagtagcctagtgactggagctcacacatttt 9114100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 25833945 - 25833915
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  25833945 gtcaagtagcctagtgactagagctcacaca 25833915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 18862375 - 18862341
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacacatttt 74  Q
    |||||||||||||||| ||||||||||||||||||    
T  18862375 gtcaagtagcctagtggctagagctcacacatttt 18862341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 42480196 - 42480228
Alignment:
Q  41 tcaagtagcctagtgactagagctcacacattt 73  Q
    |||||||||||| ||||||||||||||||||||    
T  42480196 tcaagtagcctaatgactagagctcacacattt 42480228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Complemental strand, 1151882 - 1151852
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  1151882 gtcaagtagcctagtgactagagctcacaca 1151852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 70
Target Start/End: Original strand, 7180561 - 7180591
Alignment:
Q  40 gtcaagtagcctagtgactagagctcacaca 70  Q
    |||||||||||||||||||||||||||||||    
T  7180561 gtcaagtagcctagtgactagagctcacaca 7180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University