View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_42 (Length: 407)

Name: NF17134_high_42
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_42
NF17134_high_42
[»] chr6 (6 HSPs)
chr6 (213-397)||(25322966-25323148)
chr6 (213-397)||(26152659-26152841)
chr6 (135-178)||(25322887-25322930)
chr6 (135-178)||(26152580-26152623)
chr6 (18-52)||(25322852-25322886)
chr6 (18-52)||(26152545-26152579)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 397
Target Start/End: Original strand, 25322966 - 25323148
Alignment:
Q  213 ttaacatttatgtaacaatatttaattcttattgaagctatagatatgttgannnnnnnnnnnnnnnnnatctatagacgtgttgatttttctaactcct 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  25322966 ttaacatttatataacaatatttaattcttattgaagctatagatatgttgattttttatttttttt--atctatagacgtgttgatttttctaactcct 25323063  T
Q  313 cttatcttgtgaatataatggcatccacttctttatgatgtgaataaaaccgtaaaccctaaaccaaaaacttgccaccattcat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25323064 cttatcttgtgaatataatggcatccacttctttatgatgtgaataaaaccgtaaaccctaaaccaaaaacttgccaccattcat 25323148  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 397
Target Start/End: Original strand, 26152659 - 26152841
Alignment:
Q  213 ttaacatttatgtaacaatatttaattcttattgaagctatagatatgttgannnnnnnnnnnnnnnnnatctatagacgtgttgatttttctaactcct 312  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  26152659 ttaacatttatataacaatatttaattcttattgaagctatagatatgttgattttttatttttttt--atctatagacgtgttgatttttctaactcct 26152756  T
Q  313 cttatcttgtgaatataatggcatccacttctttatgatgtgaataaaaccgtaaaccctaaaccaaaaacttgccaccattcat 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26152757 cttatcttgtgaatataatggcatccacttctttatgatgtgaataaaaccgtaaaccctaaaccaaaaacttgccaccattcat 26152841  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 25322887 - 25322930
Alignment:
Q  135 tattatactagcttcaataaaatcaacatgtttatagcttcaat 178  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  25322887 tattataccagcttcaataaaatcaacatgtttatagcttcaat 25322930  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 26152580 - 26152623
Alignment:
Q  135 tattatactagcttcaataaaatcaacatgtttatagcttcaat 178  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  26152580 tattataccagcttcaataaaatcaacatgtttatagcttcaat 26152623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 25322852 - 25322886
Alignment:
Q  18 aaatgggtctatgagatcaaatatcattcatatgg 52  Q
    |||||||||||||||||||||||||||||||||||    
T  25322852 aaatgggtctatgagatcaaatatcattcatatgg 25322886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 26152545 - 26152579
Alignment:
Q  18 aaatgggtctatgagatcaaatatcattcatatgg 52  Q
    |||||||||||||||||||||||||||||||||||    
T  26152545 aaatgggtctatgagatcaaatatcattcatatgg 26152579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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