View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_46 (Length: 383)
Name: NF17134_high_46
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 35127832 - 35127450
Alignment:
| Q |
1 |
atcaaccatttcattgtctctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccc |
100 |
Q |
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| T |
35127832 |
atcaaccatttcattgtctctctttgcttcatcctcttcattcaaatctgtaatatcactatcttgcttgaaacgcacgtcttcaagtagcagtggaccc |
35127733 |
T |
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| Q |
101 |
tgtccttgataagtaggactaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaaagcacaaggcatggaaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127732 |
tgtccttgataagtaggactaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaaagcacaaggcatggaaacta |
35127633 |
T |
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| Q |
201 |
caagaccaatagcagaagcaactacaaaacctggaagaataataggaacagaagtggctacaaaaccaaaaactaatatcttctttcccatattgagtcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35127632 |
caagaccaatagcagaagcaactacaaaacctggaagaacaataggaacagaagtggctacaaaaccaaaaactaatatcttctttcccatattgagtcc |
35127533 |
T |
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| Q |
301 |
cttcttgaacacatagttcactttgctaccattattggtattaggttcataccagtgttgactagtactagtaatcagagtat |
383 |
Q |
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| T |
35127532 |
cttcttgaacacatagttcactttgctaccattattggtattaggttcaaaccagtgttgactagtactagtaatcatagtat |
35127450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 285
Target Start/End: Original strand, 26779140 - 26779344
Alignment:
| Q |
81 |
cttcaagtagcagtggaccctgtccttgataagtaggactaggctgagggagcaacttactcattaaattctgagtacaactatggctaactaagaacaa |
180 |
Q |
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||||||||||||| ||||||||||| ||| |||||| ||||||| ||| |||||||||||| |||||| ||||| | | || ||| ||||| || |
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| T |
26779140 |
cttcaagtagcaggggaccctgtccctgaggagtaggcctaggcttaggcagcaacttactcgttaaatcatgagtgtatgaacggaaaaccaagaagaa |
26779239 |
T |
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| Q |
181 |
agcacaaggcatggaaactacaagaccaatagcagaagcaactacaaaacctggaagaataataggaacagaagtggctacaaaaccaaaaactaatatc |
280 |
Q |
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|||| ||| || |||||| |||| ||| |||||||||||||||||||||||| ||||| || ||| ||||||| ||| ||||||||| |||||| || |
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| T |
26779240 |
agcataagacagagaaactgcaaggccattagcagaagcaactacaaaacctgaaagaacaagaggggcagaagttgcttcaaaaccaaccactaatttc |
26779339 |
T |
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| Q |
281 |
ttctt |
285 |
Q |
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||||| |
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| T |
26779340 |
ttctt |
26779344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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