View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_49 (Length: 374)
Name: NF17134_high_49
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 359
Target Start/End: Original strand, 42447839 - 42448188
Alignment:
| Q |
10 |
agatgaacatgaggttcatgtgcctcagaatgttgatcttattcatcaaggagaattaacttcgaatcctgtttatagtcaaattgaaaccggttctgag |
109 |
Q |
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| T |
42447839 |
agatgaacatgaggttcatgtgcctcagaatgttgatcttattcatcaaggagaattaacttcgaatcctgtttatagtcggattgaaaccggttctgag |
42447938 |
T |
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| Q |
110 |
gcaagtccataaacccaaaggatgaattccacgacatatccatatggattaccatcatgagaaataacccaccaggatccttccagattagagatgtagg |
209 |
Q |
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| T |
42447939 |
gcaagtccataaacccaaaggatgaattccacaacatatccatatggattaccatcatgagaaataacctaccaggatccttccagattagagatgtagg |
42448038 |
T |
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| Q |
210 |
gattcgaaaagatcatattggaaggatttagccaaaattcaaagaaaagaaggatggatcgtcagataattacatcagtagatttagattaatgaaggct |
309 |
Q |
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| T |
42448039 |
gattcgaaaagatcatattggaaggatttagccaaaattcaaagaaaagaaggatggatcgttagataattacatcagtagatttagattaatgaaggct |
42448138 |
T |
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| Q |
310 |
agatacatgacaatgatcgctgaatatgacttggttctaatggttacacc |
359 |
Q |
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| T |
42448139 |
agatacatgacaatgatcgctgaatatgacttggttctaacagttacacc |
42448188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 741590 - 741671
Alignment:
| Q |
201 |
agatgtagggattcgaaaagatcatattggaaggatttagccaaaattcaaagaaaagaaggatggatcgtcagataattac |
282 |
Q |
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| T |
741590 |
agatgtagggattcgagtagatcatattggaaggatttagccaaaattcaaagaaaagaaggatgaatcattagataattac |
741671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 22769055 - 22769134
Alignment:
| Q |
246 |
attcaaagaaaagaaggatggatcgtcagataattacatcagtagatttagattaatgaaggctagatacatgacaatgat |
326 |
Q |
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|||||||||||||| | ||| ||| | |||| |||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
22769055 |
attcaaagaaaagatg-atgaatcattagatgattacatcagtagatttagattgatgaaggctagatcaacgacaatgat |
22769134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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