View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_55 (Length: 342)
Name: NF17134_high_55
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 54891259 - 54890936
Alignment:
| Q |
16 |
tatgtatcttgcaccactacatttggggatttcttaatcattacatgccaaaagaagcacacgtttttatggaaaataaaacatgtaaagacagagtgat |
115 |
Q |
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| T |
54891259 |
tatgtatcttgcaccactacatctggggatttcttaatcattacatgccaaaagaagcacacgtttttatggaaaataaaacatgtaaagacagagtgat |
54891160 |
T |
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| Q |
116 |
tcaatttggaacacggttttgtttctgtgggttacactttgctttgttgtattaaaaatcattactt--nnnnnnnnncgataataaatttggaaaacat |
213 |
Q |
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| T |
54891159 |
tcaatttggaacacggttttgtttctgtgggttacactttgctttgttgtattaaaaatcattacttaaaaaaaaaaacgataataaatttggaaaacat |
54891060 |
T |
|
| Q |
214 |
cttatcaaatcatgaaattaatttctttccttgcaagcttagagaaaaaacatattcctctgtgttttcacaacaacatatagcagaacaaagccattga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54891059 |
cttatcaaatcatgaaattaatttctttccttgcaagcttagagaaaaaacatattcctctgtgttttcacaacaacatatagcagaacaaagccattga |
54890960 |
T |
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| Q |
314 |
ttgaatatttgtgttcatctctct |
337 |
Q |
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||||||||||||||| ||||||| |
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| T |
54890959 |
ttgaatatttgtgtttttctctct |
54890936 |
T |
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