View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_57 (Length: 340)
Name: NF17134_high_57
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 38000228 - 38000534
Alignment:
| Q |
19 |
aagaaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagagaaaaccgtgttcattcaataacagaccatgatatatt |
118 |
Q |
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| T |
38000228 |
aagaaaggagaacaaaaatattagttgcacaatgtagcaaattgctttgcataaaaataagagaaaaccgtgttcattcaataacagaccatgatatatt |
38000327 |
T |
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| Q |
119 |
ttctgtcttctcttgcttatacaattttcttccacaatttcccttctctcaattaagacacattttcttcaatcgaccaaattttccttctctctcacca |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38000328 |
ttctgtcttctcttgctcatacaattttcttccacaatttcccttctctcaattaagacacattttcttcaatctaccaaattttccttctctctcacca |
38000427 |
T |
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| Q |
219 |
tgcctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgccattcactccatcattccatgatatttgtattggatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38000428 |
tgcctcaagagtcaagacaatcattgattaactaaatctcattcaattaccatgctcctcgccattcactccatcattccatgatatttgtattggttgc |
38000527 |
T |
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| Q |
319 |
ctctgtg |
325 |
Q |
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|| |||| |
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| T |
38000528 |
ctttgtg |
38000534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 38000183 - 38000220
Alignment:
| Q |
64 |
tttgcataaaaataagagaaaaccgtgttcattcaata |
101 |
Q |
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|||||| ||||||| ||||||||||||||||||||||| |
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| T |
38000183 |
tttgcacaaaaataggagaaaaccgtgttcattcaata |
38000220 |
T |
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