View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_58 (Length: 335)

Name: NF17134_high_58
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_58
NF17134_high_58
[»] chr4 (26 HSPs)
chr4 (18-106)||(41028025-41028117)
chr4 (223-311)||(25318992-25319080)
chr4 (169-319)||(35064953-35065103)
chr4 (175-312)||(26617678-26617815)
chr4 (218-319)||(33560615-33560716)
chr4 (218-319)||(11271582-11271684)
chr4 (170-283)||(2635055-2635168)
chr4 (223-319)||(22683808-22683904)
chr4 (173-268)||(1099731-1099826)
chr4 (223-311)||(2174258-2174346)
chr4 (239-319)||(32818415-32818494)
chr4 (177-319)||(8330013-8330156)
chr4 (253-319)||(18597014-18597080)
chr4 (235-317)||(54705437-54705519)
chr4 (257-314)||(29903992-29904049)
chr4 (169-288)||(20712541-20712661)
chr4 (235-319)||(49138808-49138890)
chr4 (235-286)||(43868093-43868144)
chr4 (165-195)||(24338487-24338517)
chr4 (275-313)||(35728941-35728979)
chr4 (253-319)||(50061673-50061738)
chr4 (277-306)||(8283423-8283452)
chr4 (170-250)||(48045814-48045895)
chr4 (263-319)||(2206502-2206558)
chr4 (275-303)||(4014164-4014192)
chr4 (221-265)||(29728945-29728989)
[»] chr6 (21 HSPs)
chr6 (168-319)||(5724675-5724825)
chr6 (170-297)||(29240518-29240645)
chr6 (170-268)||(10400790-10400889)
chr6 (218-319)||(765431-765531)
chr6 (223-319)||(6654135-6654230)
chr6 (168-295)||(24974105-24974232)
chr6 (236-305)||(2234272-2234341)
chr6 (170-267)||(33136579-33136675)
chr6 (174-286)||(34620782-34620894)
chr6 (174-286)||(34748219-34748331)
chr6 (218-316)||(33141754-33141852)
chr6 (218-319)||(4910848-4910948)
chr6 (218-319)||(7952754-7952854)
chr6 (218-295)||(25195433-25195509)
chr6 (172-297)||(31812203-31812328)
chr6 (178-295)||(33997098-33997215)
chr6 (258-314)||(10874330-10874386)
chr6 (224-268)||(35098553-35098597)
chr6 (253-316)||(16540082-16540144)
chr6 (175-268)||(579130-579223)
chr6 (218-286)||(6653749-6653817)
[»] chr3 (17 HSPs)
chr3 (170-319)||(1441426-1441574)
chr3 (170-293)||(52925681-52925804)
chr3 (171-273)||(5046166-5046268)
chr3 (173-319)||(7298361-7298506)
chr3 (170-294)||(39256567-39256691)
chr3 (170-265)||(3845210-3845305)
chr3 (218-305)||(48089447-48089534)
chr3 (255-313)||(23290269-23290327)
chr3 (221-298)||(33548186-33548263)
chr3 (171-284)||(48410891-48411004)
chr3 (223-319)||(40736582-40736677)
chr3 (170-245)||(3776431-3776506)
chr3 (258-297)||(30243915-30243954)
chr3 (237-319)||(32523385-32523467)
chr3 (203-265)||(54596743-54596805)
chr3 (276-313)||(49634090-49634127)
chr3 (222-306)||(43987609-43987693)
[»] chr1 (16 HSPs)
chr1 (218-319)||(28083933-28084033)
chr1 (173-316)||(32088621-32088763)
chr1 (167-248)||(15478116-15478197)
chr1 (171-319)||(6021695-6021844)
chr1 (218-319)||(12655184-12655285)
chr1 (221-297)||(37522977-37523052)
chr1 (170-268)||(9939823-9939920)
chr1 (223-304)||(37131879-37131960)
chr1 (218-267)||(47892484-47892533)
chr1 (174-294)||(41516883-41517003)
chr1 (225-283)||(646127-646185)
chr1 (201-319)||(22383322-22383440)
chr1 (235-285)||(31362279-31362329)
chr1 (176-245)||(8381882-8381951)
chr1 (218-283)||(49824829-49824894)
chr1 (208-268)||(24587839-24587899)
[»] chr5 (17 HSPs)
chr5 (170-297)||(29922786-29922913)
chr5 (174-320)||(34250395-34250540)
chr5 (218-319)||(42439662-42439763)
chr5 (171-267)||(15368136-15368232)
chr5 (261-319)||(9818717-9818774)
chr5 (216-290)||(43012675-43012749)
chr5 (185-294)||(10898629-10898738)
chr5 (171-265)||(3043102-3043196)
chr5 (203-297)||(13224685-13224778)
chr5 (172-269)||(11911903-11912000)
chr5 (170-315)||(37121477-37121622)
chr5 (222-297)||(11132852-11132927)
chr5 (208-314)||(1105369-1105475)
chr5 (168-286)||(5468664-5468781)
chr5 (275-316)||(18851130-18851170)
chr5 (287-316)||(31906267-31906296)
chr5 (173-265)||(370808-370900)
[»] chr2 (21 HSPs)
chr2 (168-314)||(37561597-37561742)
chr2 (170-245)||(7629754-7629829)
chr2 (218-297)||(33502915-33502994)
chr2 (182-286)||(1976942-1977046)
chr2 (170-297)||(3476496-3476625)
chr2 (170-232)||(3654724-3654786)
chr2 (223-273)||(7630361-7630411)
chr2 (223-297)||(11510898-11510972)
chr2 (232-318)||(31453337-31453422)
chr2 (218-319)||(42740917-42741017)
chr2 (218-294)||(36987181-36987257)
chr2 (170-265)||(15220933-15221028)
chr2 (170-245)||(42982446-42982521)
chr2 (228-297)||(680344-680412)
chr2 (218-287)||(7630100-7630168)
chr2 (223-319)||(2002740-2002835)
chr2 (226-306)||(4908737-4908817)
chr2 (228-268)||(42906966-42907006)
chr2 (171-243)||(43717235-43717307)
chr2 (243-311)||(44505891-44505959)
chr2 (278-314)||(44810374-44810410)
[»] chr8 (16 HSPs)
chr8 (218-319)||(37684345-37684445)
chr8 (235-316)||(32927849-32927929)
chr8 (223-304)||(42455857-42455937)
chr8 (222-314)||(11791783-11791875)
chr8 (170-295)||(4554226-4554351)
chr8 (173-266)||(39648242-39648335)
chr8 (170-273)||(41614736-41614839)
chr8 (173-272)||(7533696-7533791)
chr8 (239-319)||(4662948-4663027)
chr8 (226-286)||(7720125-7720185)
chr8 (173-245)||(24776211-24776283)
chr8 (224-294)||(5997352-5997422)
chr8 (255-305)||(35775656-35775706)
chr8 (169-319)||(36200177-36200326)
chr8 (253-319)||(44141095-44141160)
chr8 (223-268)||(12742231-12742276)
[»] scaffold0168 (1 HSPs)
scaffold0168 (169-316)||(31717-31863)
[»] chr7 (14 HSPs)
chr7 (175-265)||(38123746-38123836)
chr7 (203-265)||(17111800-17111862)
chr7 (221-273)||(12306920-12306972)
chr7 (203-319)||(22195789-22195904)
chr7 (172-319)||(40491472-40491618)
chr7 (221-319)||(41386860-41386957)
chr7 (223-297)||(45004965-45005038)
chr7 (208-296)||(1063595-1063683)
chr7 (203-245)||(6996460-6996502)
chr7 (218-268)||(12306674-12306724)
chr7 (276-318)||(17111855-17111896)
chr7 (202-268)||(36270904-36270970)
chr7 (219-265)||(48158832-48158878)
chr7 (253-314)||(40422767-40422828)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-319)||(23638-23738)
[»] scaffold0393 (1 HSPs)
scaffold0393 (228-297)||(12373-12442)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 41028025 - 41028117
Alignment:
Q  18 gtttccggtgatcaggagaaggattccgatcaccatcctcaggttagtta----gtttgtttgtttgcatctctctctgttttcaattaatta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||| |||||    
T  41028025 gtttccggtgatcaggagaaggattccgatcaccatcctcaggttagttagtttgtttgtttgtttgcatctctctctgttttcaatcaatta 41028117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 25318992 - 25319080
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttt 311  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||||| || |||||||| ||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattctaacttgaaggtaggatttgtagcttt 25319080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 35064953 - 35065103
Alignment:
Q  169 tgtgtatgttt-ggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    ||||||||||| |||||||||| | |||| | || |||| ||| | | | |||| |||||||| || ||| |||||||||||| ||||||||||||||||    
T  35064953 tgtgtatgttttggttccacttctcgaggggtcaaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgatttt 35065052  T
Q  268 gtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    | |||  ||||||||| | |||||||||||  |||||| |||||||||||||    
T  35065053 gcctcaataattgatt-ttacttgaagctagtatttgtgacttttgattcta 35065103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 312
Target Start/End: Complemental strand, 26617815 - 26617678
Alignment:
Q  175 tgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccg 274  Q
    |||||||  ||||||||||| |||  | |||| |||||||   |||||||||||||||| ||||||||| ||||||  | |||||||||||||| ||||     
T  26617815 tgtttggcgccacttttggatgtgctaaaattgattctagatgtgtaaaattgattttgacatgtttggatgcttttcaatagaattgattttgcctcca 26617716  T
Q  275 taattgattctaacttgaagctatgatttgtaactttt 312  Q
    ||||||| | ||| |||| | ||||||||||| |||||    
T  26617715 taattgaatataaattgatgttatgatttgtagctttt 26617678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 33560716 - 33560615
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    ||||| |||||||||| |||||||||||||| | ||||||||||||||||| |||   |||||||||||||   |||||| |||||||| ||||||| ||    
T  33560716 tgtaacattgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattctaaccgaaagctaggatttgtagcttttgagtc 33560617  T
Q  318 ta 319  Q
    ||    
T  33560616 ta 33560615  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 11271684 - 11271582
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaatt-gattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    |||||||||||||||| || || |||||||| | |||| | ||| ||||||| ||||  |||||||||||||||||||||| |||||||| ||||||| |    
T  11271684 tgtaaaattgattttgacaagtatggttgctgtcgagtggtatttgattttgcctccagaattgattctaacttgaagctaggatttgtagcttttgagt 11271585  T
Q  317 cta 319  Q
    |||    
T  11271584 cta 11271582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 2635055 - 2635168
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    |||||||||||||| ||||||| ||||   || |||| |||||||   |||||||||||||||| |||||||| |||||||  ||||||| ||||||||     
T  2635055 gtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgc 2635154  T
Q  270 ctccgtaattgatt 283  Q
    ||||  ||||||||    
T  2635155 ctccagaattgatt 2635168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Original strand, 22683808 - 22683904
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    ||||||||||| |||||| | ||| ||| ||||| ||||||||||| ||||  |||| ||| ||||||||||||||||| |||| ||||||| ||||    
T  22683808 aattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaattaattataacttgaagctatgatctgtagcttttgagtcta 22683904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 268
Target Start/End: Original strand, 1099731 - 1099826
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    |||||||||| ||||||||||||| | || |||| ||||||| |||| | |||||||||||  || |||||||||| | ||| |||||||||||||    
T  1099731 tatgtttggtaccacttttggaggagacaaaattgattctagagatgcagaattgattttgaaatatttggttgctctcgagcagaattgattttg 1099826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 311
Target Start/End: Complemental strand, 2174346 - 2174258
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttt 311  Q
    |||||||||||  |||||||| ||||   ||||||||||||||||||||||| |||||||| ||||| ||| |||  ||||||| ||||    
T  2174346 aattgattttgaaatgtttggatgctagtgagtagaattgattttgtctccggaattgattgtaactagaaactagaatttgtagcttt 2174258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 32818494 - 32818415
Alignment:
Q  239 tttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    ||||||| |||| ||||||||||||||||| ||||  |||||||||| | |||||||||  ||||||| ||||||||||||    
T  32818494 tttggtttctttcgagtagaattgattttgcctccagaattgattct-atttgaagctagaatttgtagcttttgattcta 32818415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 8330013 - 8330156
Alignment:
Q  177 tttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgt-catgtttggttgctttggagtagaattgattttgtctccgt 275  Q
    ||||||| ||||| |||||| | || |||| ||||||| | || | |||| ||||| | |||||||||||||| |  |||| |||||||| || |||| |    
T  8330013 tttggtttcacttctggaggagccagaattgattctagaggtgaataattaattttttacatgtttggttgctctcaagtaaaattgattctgcctccat 8330112  T
Q  276 aattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    ||| ||||||||||||||||||  | ||| | ||||||||||||    
T  8330113 aatggattctaacttgaagctagaaattggagcttttgattcta 8330156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 18597014 - 18597080
Alignment:
Q  253 agtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||| ||||||||||  ||||  ||||||||||||||||||||||| ||||| | ||||||||||||    
T  18597014 agtaaaattgattttacctccagaattgattctaacttgaagctataatttgaaccttttgattcta 18597080  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 54705519 - 54705437
Alignment:
Q  235 catgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    ||||||||||||||    |||| ||||||||||| |||  |||||||| |||||||||||||| | |||||| ||||||||||    
T  54705519 catgtttggttgctcacaagtataattgattttgcctcaataattgatactaacttgaagctagggtttgtagcttttgattc 54705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 29903992 - 29904049
Alignment:
Q  257 gaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttga 314  Q
    |||||||||||| |||   |||||||||||||||||||||||  ||||||||||||||    
T  29903992 gaattgattttgactctaaaattgattctaacttgaagctatattttgtaacttttga 29904049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 288
Target Start/End: Original strand, 20712541 - 20712661
Alignment:
Q  169 tgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    |||| |||||||||||||||| |||| | |||| |||| ||||||| | | || ||||||||||  |||| ||| ||||| |  | ||||||||||||||    
T  20712541 tgtgcatgtttggttccacttatggaagaggcaaaattgattctagaggtttagaattgatttttacatgcttgtttgctctcaaatagaattgattttg 20712640  T
Q  269 tctcc-gtaattgattctaac 288  Q
     |||| | |||||||||||||    
T  20712641 cctccggaaattgattctaac 20712661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 49138890 - 49138808
Alignment:
Q  235 catgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||||| |||  |||| ||||||||||| ||||  | || |||||| |||||||||| |||||||||||||||||||||    
T  49138890 catgtttggttgttttcaagtaaaattgattttgcctccaaactt-attcta-cttgaagctaggatttgtaacttttgattcta 49138808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 43868093 - 43868144
Alignment:
Q  235 catgtttggttgctttggagtagaattgattttgtctccgtaattgattcta 286  Q
    ||||||||||||||||  ||||||||| |||||||||||  |||||||||||    
T  43868093 catgtttggttgctttctagtagaattaattttgtctccacaattgattcta 43868144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 195
Target Start/End: Original strand, 24338487 - 24338517
Alignment:
Q  165 aagttgtgtatgtttggttccacttttggag 195  Q
    |||||||||||||||||||||||||||||||    
T  24338487 aagttgtgtatgtttggttccacttttggag 24338517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 35728941 - 35728979
Alignment:
Q  275 taattgattctaacttgaagctatgatttgtaacttttg 313  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  35728941 taattaattctaacttgaagctatgatttgtaccttttg 35728979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 50061738 - 50061673
Alignment:
Q  253 agtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||||||||| ||||  |||||||||| |||||||| || ||||||||  |||||||||||    
T  50061738 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtagtttttgattcta 50061673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 8283452 - 8283423
Alignment:
Q  277 attgattctaacttgaagctatgatttgta 306  Q
    ||||||||||||||||||||||||||||||    
T  8283452 attgattctaacttgaagctatgatttgta 8283423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 48045895 - 48045814
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggc-ataattaattctagggatgtaaaattgattttgtcatgtttggttgcttt 250  Q
    |||||||||||||||||||| | |||| ||| | |||| ||||||| || ||| ||||||||  | ||||||||||||||||    
T  48045895 gtgtatgtttggttccacttctagagggggccaaaattgattctagagaagtagaattgattcggacatgtttggttgcttt 48045814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 319
Target Start/End: Original strand, 2206502 - 2206558
Alignment:
Q  263 attttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||| |||| |||||||||||||||||||||||    ||||| ||||||||||||    
T  2206502 attttggctccataattgattctaacttgaagctaaacattgtagcttttgattcta 2206558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 4014164 - 4014192
Alignment:
Q  275 taattgattctaacttgaagctatgattt 303  Q
    |||||||||||||||||||||||||||||    
T  4014164 taattgattctaacttgaagctatgattt 4014192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 29728945 - 29728989
Alignment:
Q  221 aaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    ||||||||||||| || ||||||||||| | ||||||||||||||    
T  29728945 aaaattgattttgacaagtttggttgctctcgagtagaattgatt 29728989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 5724825 - 5724675
Alignment:
Q  168 ttgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||||||||||||||||||||| | |||| | || ||||||||||||   |||| |||||||| || ||||||||| ||||||   ||||||||||||||    
T  5724825 ttgtgtatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgatttt 5724726  T
Q  268 gtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    | ||||  |||||||||| ||||||||||| |||||||||||||| ||||||    
T  5724725 gcctccaaaattgattct-acttgaagctaggatttgtaactttttattcta 5724675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 29240645 - 29240518
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    |||||||||||||||||||||||| ||   || |||| ||||||| | |||||||||||||||| |||||| || |  |||  |||||||||||||||      
T  29240645 gtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgattttac 29240546  T
Q  270 ctccgtaattgattctaacttgaagcta 297  Q
    ||||  | ||||||||||||||||||||    
T  29240545 ctccagagttgattctaacttgaagcta 29240518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 10400889 - 10400790
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttgg-ttgctttggagtagaattgattttg 268  Q
    ||||||||||||||||||| |||||||  ||| |||| ||||||| | |||| |||||||||||  |||||||| ||||||| ||||||||||| |||||    
T  10400889 gtgtatgtttggttccactcttggaggatgcaaaattgattctagaggtgtataattgattttgatatgtttggtttgctttcgagtagaattgtttttg 10400790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 765531 - 765431
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||| |||||||| || | ||||||||||||||  ||||||| || ||||| |||   ||||||||||| ||||||||||||||||||| ||||||||||    
T  765531 tgtagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattcta-cttgaagctatgatttgtagcttttgattc 765433  T
Q  318 ta 319  Q
    ||    
T  765432 ta 765431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 6654230 - 6654135
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||  || |  |||| ||||| ||||||||||| |||||||| ||||| ||||||    
T  6654230 aattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattct-acttgaagctaggatttgtagcttttaattcta 6654135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 24974105 - 24974232
Alignment:
Q  168 ttgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    ||||||||||||| ||||||||||||||| | || | |||||| ||||| |||| |||||||||||   ||  |||||||  | |  |||||||||||||    
T  24974105 ttgtgtatgtttgattccacttttggaggagccaaagttaattgtaggggtgtagaattgattttgatgtgcatggttgccctcggatagaattgatttt 24974204  T
Q  268 gtctccgtaattgattctaacttgaagc 295  Q
    | ||||  ||||||||||||| ||||||    
T  24974205 gcctccaaaattgattctaacatgaagc 24974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 2234341 - 2234272
Alignment:
Q  236 atgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgt 305  Q
    ||||||||||||| | ||||||||||||||||| ||||  ||||||||||||| ||||| || |||||||    
T  2234341 atgtttggttgctcttgagtagaattgattttgcctcctgaattgattctaacatgaagttaagatttgt 2234272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 267
Target Start/End: Complemental strand, 33136675 - 33136579
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||||| ||||||| ||||||||||   | || |||||||||||| | |||| ||||||||||| |||||||||||||| | ||||| ||||||||||    
T  33136675 gtgtatatttggtttcacttttggaaa-gccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatttt 33136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 34620782 - 34620894
Alignment:
Q  174 atgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    |||||| ||||||||||||||||   || |||| ||||||  | |||| ||||||||||| ||||||||||| || |  | ||||||| |||||| ||||    
T  34620782 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctcc 34620881  T
Q  274 gtaattgattcta 286  Q
    | |||||||||||    
T  34620882 ggaattgattcta 34620894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 34748219 - 34748331
Alignment:
Q  174 atgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    |||||| ||||||||||||||||   || |||| ||||||  | |||| ||||||||||| ||||||||||| || |  | ||||||| |||||| ||||    
T  34748219 atgtttcgttccacttttggaggacccaaaattgattctaaaggtgtagaattgattttgacatgtttggttcctataaactagaattaattttgcctcc 34748318  T
Q  274 gtaattgattcta 286  Q
    | |||||||||||    
T  34748319 ggaattgattcta 34748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 33141852 - 33141754
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    ||||||||||||||||  ||||||||||||| |  |||| ||||||||||  ||||  |||||||||||||| ||| |||  ||||| | |||||||||    
T  33141852 tgtaaaattgattttgatatgtttggttgctctcaagtataattgattttacctccagaattgattctaactagaacctagaatttgaagcttttgatt 33141754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 4910848 - 4910948
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||| |||||||| || ||||||||||||   |  | ||||||||||| || |||   ||||||||||| ||||||||||||||||||| ||||||||||    
T  4910848 tgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattcta-cttgaagctatgatttgtagcttttgattc 4910946  T
Q  318 ta 319  Q
    ||    
T  4910947 ta 4910948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 7952854 - 7952754
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    ||||||||||||| || |||||||| ||| ||| |||| || || |||||| ||||  |||| |||||| |||||||| | |||||||| ||||||||||    
T  7952854 tgtaaaattgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatttattcta-cttgaagcgaggatttgtagcttttgattc 7952756  T
Q  318 ta 319  Q
    ||    
T  7952755 ta 7952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 25195509 - 25195433
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagc 295  Q
    |||| |||||||| || |||||||||||||| | ||||| |||||||| || ||||| |||||||||| |||||||||    
T  25195509 tgtataattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattct-acttgaagc 25195433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 297
Target Start/End: Original strand, 31812203 - 31812328
Alignment:
Q  172 gtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtct 271  Q
    |||||||||||| |||||||||||   ||| |||| ||| ||| | | || ||||||||||| ||||||||||||   | |||||||||| ||||||| |    
T  31812203 gtatgtttggtttcacttttggagtaagcaaaattcattatagaggtctagaattgattttgacatgtttggttgtagtcgagtagaatttattttgtat 31812302  T
Q  272 ccgtaattgattctaacttgaagcta 297  Q
        |||||||||| |||||||||||    
T  31812303 gtagaattgattctgacttgaagcta 31812328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 295
Target Start/End: Original strand, 33997098 - 33997215
Alignment:
Q  178 ttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaa 277  Q
    |||||||||||||||||||   || |||| ||||||| ||| || ||| ||||||| ||||||||||| || |  || |  |||||||||| || |  ||    
T  33997098 ttggttccacttttggaggaaccaaaattgattctagagatttagaatcgattttgacatgtttggtttctctcaagcattattgattttgccttcacaa 33997197  T
Q  278 ttgattctaacttgaagc 295  Q
    ||||||||||||||||||    
T  33997198 ttgattctaacttgaagc 33997215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Complemental strand, 10874386 - 10874330
Alignment:
Q  258 aattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttga 314  Q
    ||||||||||| ||| |||||||||||||||||||| | || ||||||| |||||||    
T  10874386 aattgattttgcctctgtaattgattctaacttgaaacaataatttgtagcttttga 10874330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 35098597 - 35098553
Alignment:
Q  224 attgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||    
T  35098597 attgattttgacatgtttggttacttttgagtagaattgattttg 35098553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 16540082 - 16540144
Alignment:
Q  253 agtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    |||| |||||||| |||||||  ||||||||||| |||||||||| |||||||| |||||||||    
T  16540082 agtaaaattgattctgtctccaaaattgattcta-cttgaagctaggatttgtagcttttgatt 16540144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 268
Target Start/End: Complemental strand, 579223 - 579130
Alignment:
Q  175 tgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||| |||||||||||||||  |  | |||| ||||||| ||||||||| |||||||| |||| ||| ||||| | |||||||| ||| ||||    
T  579223 tgtttcgttccacttttggagcagctagaattgattctagagatgtaaaactgattttgacatgattgattgctctcgagtagaactgactttg 579130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 6653749 - 6653817
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattcta 286  Q
    |||| ||||||||||| | |||||||||||| |  ||||||||||||| || |||  ||||||||||||    
T  6653749 tgtataattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 170 - 319
Target Start/End: Complemental strand, 1441574 - 1441426
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||||||||||||||||||    || ||||| |||||| | |||| |||||| |||| ||||||||||| |||| ||||||||||||||||||    
T  1441574 gtgtatgtttggttccacttttggagtaaccaaaattatttctagaggtgtagaattgagtttgacatgtttggtttcttttgagtagaattgattttgt 1441475  T
Q  270 ctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||  |||| || ||| ||||||| ||| |||||||| ||||||||||||    
T  1441474 ctctataatcgactct-acttgaaactaggatttgtagcttttgattcta 1441426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 52925804 - 52925681
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||| ||||||||||||||||| | || |||| ||||||| | |||| ||||||||||| |||||||||||||| |   |||||||  ||||||     
T  52925804 gtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgtataattgattttgacatgtttggttgctctcacgtagaatcaattttgc 52925705  T
Q  270 ctccgtaattgattctaacttgaa 293  Q
    |||| ||| |||||||||||||||    
T  52925704 ctccataactgattctaacttgaa 52925681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 5046268 - 5046166
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtc 270  Q
    |||||||||||||||||||||||||| |  |   || ||||||| | ||||||||||||||||  ||||||| || |||| ||||||| ||||||||| |    
T  5046268 tgtatgtttggttccacttttggaggagctaatgttgattctagaggtgtaaaattgattttgatatgtttgatttctttagagtagagttgattttgcc 5046169  T
Q  271 tcc 273  Q
    |||    
T  5046168 tcc 5046166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 7298506 - 7298361
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctc 272  Q
    ||||||||||||||| ||| ||||   ||||||| ||||||| | |||||||||||| ||  |||||| || ||||   ||| ||| ||||| |||||||    
T  7298506 tatgtttggttccacgttttgaggaatcataattgattctagagttgtaaaattgatatttacatgttcggatgctcacgagcaga-ttgatgttgtctc 7298408  T
Q  273 cgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |  ||| |||||||||||||||||| ||||||||  |||||| ||||    
T  7298407 cagaatcgattctaacttgaagctaggatttgtagtttttgagtcta 7298361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 39256567 - 39256691
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    |||| |||||||||||||||||||||    || ||||| |||||| | |||| ||||||||||| |||||||| || || |  ||||||||||| ||||     
T  39256567 gtgtgtgtttggttccacttttggagaaatcaaaattagttctagaggtgtagaattgattttgacatgtttgattactctcaagtagaattgactttga 39256666  T
Q  270 ctccgtaattgattctaacttgaag 294  Q
    ||||  ||||| |||| ||||||||    
T  39256667 ctccaaaattgtttctgacttgaag 39256691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 3845305 - 3845210
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    ||||||||||||||||||||||||||    || |||| ||||||| | |||| ||||||||||| |||||||| ||| | |  |||||||||||||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 48089534 - 48089447
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgt 305  Q
    |||||||||||||||| |||||||||||||| | ||||| |||| |||||| |||   ||||||||| ||| | |||||| |||||||    
T  48089534 tgtaaaattgattttggcatgtttggttgctctcgagtataattaattttgcctcaagaattgattcaaaccttaagctaggatttgt 48089447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 23290269 - 23290327
Alignment:
Q  255 tagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttg 313  Q
    ||||||||||| ||||||  || |||||||||||||||| |||||||||||| ||||||    
T  23290269 tagaattgattatgtctctatagttgattctaacttgaaactatgatttgtagcttttg 23290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 33548186 - 33548263
Alignment:
Q  221 aaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctat 298  Q
    ||||||||||||| ||||||||| |||| |  |||||||||||||||  || |  ||| |||||||||||||||||||    
T  33548186 aaaattgattttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagctat 33548263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 284
Target Start/End: Complemental strand, 48411004 - 48410891
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtc 270  Q
    ||||||||||||| ||||||| |||| | || |||| ||||||    |||  |||||||| ||  ||||||| ||||||| ||||||||||||||||| |    
T  48411004 tgtatgtttggttacacttttagaggggtcagaattgattctataagtgtggaattgattctgagatgtttgattgctttcgagtagaattgattttgcc 48410905  T
Q  271 tccgtaattgattc 284  Q
    |||  |||||||||    
T  48410904 tccaaaattgattc 48410891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 40736677 - 40736582
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    ||||||||||| | |||||| ||| | | ||||| |||||||||||  |||| |||||||||| ||||||| |||| ||||||  ||||||||||||    
T  40736677 aattgattttgacgtgtttgattgttgtcgagtaaaattgattttgcatccgaaattgattct-acttgaaactataatttgtcgcttttgattcta 40736582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 3776431 - 3776506
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    |||||| |||||||||||||||||||| | || ||||  || ||| | |||| ||||||||||| |||||||||||    
T  3776431 gtgtatatttggttccacttttggaggagacaaaattggttatagaggtgtagaattgattttgacatgtttggtt 3776506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 30243915 - 30243954
Alignment:
Q  258 aattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  30243915 aattgattctgtctccataattgattctaacttgaagcta 30243954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 32523467 - 32523385
Alignment:
Q  237 tgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||||||| ||||| ||| ||||||| |||| |||||  |||||  | |||| || |||||||| ||||||||||||    
T  32523467 tgtttggttgctttcgagtaaaatagattttgcctccataattatttctacttggaagttaggatttgtagcttttgattcta 32523385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 54596743 - 54596805
Alignment:
Q  203 aattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    |||||||| ||| | ||||||||||||| || |||||||||||| |||  |||||||||||||    
T  54596743 aattaattttagaggtgtaaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 49634127 - 49634090
Alignment:
Q  276 aattgattctaacttgaagctatgatttgtaacttttg 313  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  49634127 aattgattctaacttgaagctaggatttgtagcttttg 49634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 43987693 - 43987609
Alignment:
Q  222 aaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgta 306  Q
    |||||||||||| ||||||||| || | | ||||| |||||||||||||| |  |||  ||||||||| |||||||  |||||||    
T  43987693 aaattgattttgacatgtttggatgttcttgagtacaattgattttgtctacagaatcaattctaactggaagctagaatttgta 43987609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 28084033 - 28083933
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||| |||||||| || ||| |||||||| ||| |||||||||||||||||||| ||||||||||||| |||||||||||  ||||||| ||||||||||    
T  28084033 tgtagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattct-acttgaagctagaatttgtagcttttgattc 28083935  T
Q  318 ta 319  Q
    ||    
T  28083934 ta 28083933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 316
Target Start/End: Complemental strand, 32088763 - 32088621
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctc 272  Q
    |||||||| |||||| |||||||  | || | |||||||| |   |||||||||||||||| |||||||||||||| |  |||||||||||||||  ||     
T  32088763 tatgtttgattccacgtttggagcagtcaaagttaattctggacgtgtaaaattgattttgacatgtttggttgctctcaagtagaattgatttt-ccta 32088665  T
Q  273 cgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    |  |||||||||||||||||||||| |||||  | |||||||||    
T  32088664 caaaattgattctaacttgaagctaggatttcgagcttttgatt 32088621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 248
Target Start/End: Complemental strand, 15478197 - 15478116
Alignment:
Q  167 gttgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgct 248  Q
    |||||||||||||||||||||||||||||| | || | || ||| ||| | |||| ||||||||||| ||||||||||||||    
T  15478197 gttgtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttggttgct 15478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 6021695 - 6021844
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaat---tgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||||||||||||||||||||||||| |  | |||| ||||||| | |||| |||   |||||||| || ||||| ||| |||  |||||||||||||||    
T  6021695 tgtatgtttggttccacttttggaggagtta-aattgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T
Q  268 gtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    | |||   ||| |||||| ||||||||||| ||| |||| ||||||||||||    
T  6021794 gcctctagaatcgattct-acttgaagctaggatatgtagcttttgattcta 6021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 12655184 - 12655285
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||||| ||||||||| ||||||| |||||||||||||||| | || |||| |||   |||| |||||||||||||||||  ||||||| | ||||| ||    
T  12655184 tgtaaagttgattttgacatgtttagttgctttggagtagattcgactttgcctctagaattaattctaacttgaagctagaatttgtagcatttgagtc 12655283  T
Q  318 ta 319  Q
    ||    
T  12655284 ta 12655285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 37523052 - 37522977
Alignment:
Q  221 aaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||||||||| || |||||||| ||||| |||||||||||||||||| ||||   |||||||||| |||||||||||    
T  37523052 aaaattgattatgacatgtttgattgctctggagtagaattgattttttctctcgaattgattct-acttgaagcta 37522977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 268
Target Start/End: Complemental strand, 9939920 - 9939823
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||||||||| ||||||||||  ||| |||| || | ||||||| | ||||||||| |||||| ||||||||||| || | ||||| |||||||||||    
T  9939920 gtgtatgtttg-ttccacttttctaggaggcaaaactgattctagaggtgtaaaattaattttgacatgtttggttcctctagagtataattgattttg 9939823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 37131879 - 37131960
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttg 304  Q
    ||||||||||| |||||||||||||| | ||||||| ||||||||| ||  ||||| ||||  | |||||||||| ||||||    
T  37131879 aattgattttggcatgtttggttgctctcgagtagatttgattttgcctatgtaatcgattacaccttgaagctaggatttg 37131960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 47892533 - 47892484
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||| ||||||||  |||||||||||||||||| ||||||||||||||||    
T  47892533 tgtagaattgattccgtcatgtttggttgcttttgagtagaattgatttt 47892484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 294
Target Start/End: Original strand, 41516883 - 41517003
Alignment:
Q  174 atgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    ||||||||||||||||||||||| | || |||  ||||||| | |||| |||||||| || ||| || |  || ||| |||||||||||||||||  |      
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgtagaattgattatgacatcttggaatgttttcgagtagaattgattttgcgttt 41516982  T
Q  274 gtaattgattctaacttgaag 294  Q
      |||||||||||||||||||    
T  41516983 aaaattgattctaacttgaag 41517003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 283
Target Start/End: Original strand, 646127 - 646185
Alignment:
Q  225 ttgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgatt 283  Q
    |||||| || |||||||||||| ||| ||||||||||||||||| ||||  ||||||||    
T  646127 ttgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 319
Target Start/End: Complemental strand, 22383440 - 22383322
Alignment:
Q  201 ataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatga 300  Q
    |||||| |||||||   |||||||||||||||| || | ||||||||||| || || ||||||| ||| || |  ||||||||||||||  ||| || ||    
T  22383440 ataattgattctagaagtgtaaaattgattttgacacgcttggttgctttcgaatataattgatattgacttcagaattgattctaactgaaagttagga 22383341  T
Q  301 tttgtaacttttgattcta 319  Q
    ||||||  |||||| ||||    
T  22383340 tttgtagtttttgagtcta 22383322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 31362329 - 31362279
Alignment:
Q  235 catgtttggttgctttggagtagaattgattttgtctccgtaattgattct 285  Q
    ||||||||||||||||   ||||||||||||||| |||| |||||||||||    
T  31362329 catgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 8381882 - 8381951
Alignment:
Q  176 gtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    ||||||||| |||| |||||| | || |||| ||||||| | | |||||||||||||| |||||||||||    
T  8381882 gtttggttcgacttctggaggagtcaaaattgattctagaggtataaaattgattttgacatgtttggtt 8381951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 49824829 - 49824894
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgatt 283  Q
    |||| ||||||||||| ||| |||| ||||||| ||||| ||||||||||| ||||  ||||||||    
T  49824829 tgtagaattgattttgacatctttgtttgctttcgagtacaattgattttggctccaaaattgatt 49824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 24587839 - 24587899
Alignment:
Q  208 attctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||||| | |||| |||||||| || |||||||||||||| | |||||||||||| ||||    
T  24587839 attctagaggtgtagaattgattgtgacatgtttggttgctcttgagtagaattgactttg 24587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 29922786 - 29922913
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||  |||||||||| |||| | || |||| |||||||   |||| ||||||||||| |||||||||||| | | ||| ||||||||||||||    
T  29922786 gtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgattttgt 29922885  T
Q  270 ctccgtaattgattctaacttgaagcta 297  Q
    |||   |||||||| |||||||||||||    
T  29922886 ctcaagaattgattttaacttgaagcta 29922913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 34250540 - 34250395
Alignment:
Q  174 atgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    ||||||||||||||||||| ||| |  |||||| |||||||   |||| ||||| ||||| ||||||||||| || | |||||||||||||| || |||     
T  34250540 atgtttggttccacttttgaaggagttataattgattctagatgtgtagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctct 34250441  T
Q  274 gtaattgattctaacttgaagctatgatttgtaacttttgattctac 320  Q
      |||||||||| |||||| ||||  | ||||| |||||||||||||    
T  34250440 agaattgattct-acttgatgctagaaattgtagcttttgattctac 34250395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 42439763 - 42439662
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||||||||||||||| ||  |||||||||||  || |||||||||||||  ||||  ||||||||||||||||||||||  || |||| ||||||| ||    
T  42439763 tgtaaaattgattttgacacatttggttgcttgtgactagaattgatttttcctccagaattgattctaacttgaagctagaatctgtagcttttgagtc 42439664  T
Q  318 ta 319  Q
    ||    
T  42439663 ta 42439662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 15368136 - 15368232
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||||||||||||||||||||||||| | || |||| |||||||  ||||| ||||||||||| ||||| ||||| |||  ||||| ||||| ||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgtatggttccttcagagtataattgttttt 15368232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 319
Target Start/End: Original strand, 9818717 - 9818774
Alignment:
Q  261 tgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  9818717 tgattttgcctccataattgattcta-cttgaagctatgatttgtagcttttgattcta 9818774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 43012675 - 43012749
Alignment:
Q  216 gatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaactt 290  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||||||||  | |  |||||||||||||||    
T  43012675 gatgtaaaattgattttgacatgtttgtttgatttagagtagaattgattttgctttctgaattgattctaactt 43012749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 10898629 - 10898738
Alignment:
Q  185 cacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattc 284  Q
    ||||||||||||   || |||| ||||||| | |||  |||| |||||| |||||||||||||| | ||||| ||||||||||| |||   |||||||||    
T  10898629 cacttttggaggaatcaaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattc 10898728  T
Q  285 taacttgaag 294  Q
    ||||||||||    
T  10898729 taacttgaag 10898738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 265
Target Start/End: Complemental strand, 3043196 - 3043102
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    ||||||| ||||||||||| ||||||   || |||| ||||||| | |||| ||||||||||| ||||||| |||||||  || |||||||||||    
T  3043196 tgtatgtctggttccacttatggaggaatcaaaattgattctagaggtgtagaattgattttgacatgtttagttgcttaagaatagaattgatt 3043102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 13224778 - 13224685
Alignment:
Q  203 aattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||| ||||||| |||||| ||||||||||| ||||||||| || ||  ||||| |||||||||||| ||  ||||| |||| ||||||||||||    
T  13224778 aattgattctagagatgtataattgattttgacatgtttggatg-ttccgagtataattgattttgtttctataattcattcaaacttgaagcta 13224685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 11912000 - 11911903
Alignment:
Q  172 gtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||||  | |||||| || | || |||| ||||||| |||||||||||||||||| | ||||| ||||  ||  |||||||||||||||||    
T  11912000 gtatgtttggttttaattttggtggggtcaaaattgattctagagatgtaaaattgattttgacttgtttagttgtgttaaagtagaattgattttgt 11911903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 37121477 - 37121622
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||||||||| || | |||| | || |||| ||||||| | ||||  |||  ||||||||||||| |||||| | || || |||||||||||     
T  37121477 gtgtatgtttggttccatttgtagaggagccaaaattgattctagaggtgtagcattatttttgtcatgtttagttgctcttgactataattgattttga 37121576  T
Q  270 ctccgtaattgattctaacttgaagctatgatttgtaacttttgat 315  Q
    ||||  || |||||||||||| || |||| | ||| | ||||||||    
T  37121577 ctccagaaatgattctaacttaaacctataaattgaagcttttgat 37121622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 11132927 - 11132852
Alignment:
Q  222 aaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    ||||||| |||| |||||||||||||| |  ||||||||| |||||| |  |  ||||||||||||||||||||||    
T  11132927 aaattgactttgacatgtttggttgctctctagtagaatttattttggcgtcaaaattgattctaacttgaagcta 11132852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 1105369 - 1105475
Alignment:
Q  208 attctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaa 307  Q
    ||||||| | |||| ||||||||||| ||| ||||| || | |  ||||||||||||||||  | |  |||||||| ||||| |||| |||||||||||     
T  1105369 attctagaggtgtataattgattttgacatttttggctgttctcaagtagaattgattttgctttcaaaattgattttaactcgaagttatgatttgtag 1105468  T
Q  308 cttttga 314  Q
    |||||||    
T  1105469 cttttga 1105475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 5468664 - 5468781
Alignment:
Q  168 ttgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    ||||||||||||||||||||||||  ||| | ||||||| ||||||| | ||| | ||||||| || |||||||| ||| | | || || |||||||| |    
T  5468664 ttgtgtatgtttggttccacttttaaaggggtcataattgattctagaggtgt-agattgattatgacatgtttgattgttgtcgattataattgattct 5468762  T
Q  268 gtctccgtaattgattcta 286  Q
    | |||| || |||||||||    
T  5468763 gcctccatatttgattcta 5468781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 18851170 - 18851130
Alignment:
Q  275 taattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  18851170 taattgattcta-cttgaagctatgatttgtagcttttgatt 18851130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 316
Target Start/End: Original strand, 31906267 - 31906296
Alignment:
Q  287 acttgaagctatgatttgtaacttttgatt 316  Q
    ||||||||||||||||||||||||||||||    
T  31906267 acttgaagctatgatttgtaacttttgatt 31906296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 370900 - 370808
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    |||||||||||||| ||||  ||| | || |||  ||||| | ||||||||||||||| ||  ||||||||||| |||  |||||||||||||    
T  370900 tatgtttggttccatttttaaaggagtcaaaatagattctcgagatgtaaaattgattatgatatgtttggttgtttttaagtagaattgatt 370808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 314
Target Start/End: Original strand, 37561597 - 37561742
Alignment:
Q  168 ttgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatttt 267  Q
    |||||||||||||||| || ||||||| | |||  |||| ||||||| | |||||||||||||||| ||||||||  | |  |  |||||| ||||||||    
T  37561597 ttgtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgtaaaattgattttgacatgtttgaattc-ctcaagtagatttgatttt 37561695  T
Q  268 gtctccgtaattgattctaacttgaagctatgatttgtaacttttga 314  Q
    | |||  ||||||||||||||||||| ||| |||||||| |||||||    
T  37561696 gcctctataattgattctaacttgaaactacgatttgtaccttttga 37561742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 7629754 - 7629829
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    ||||||||||||||||||||||||||| | ||  ||| ||||||| | |||| |||||||||||||||||||||||    
T  7629754 gtgtatgtttggttccacttttggaggagccaagattgattctagaggtgtagaattgattttgtcatgtttggtt 7629829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 33502994 - 33502915
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||||||||||||||| |||||||||||||| | ||||| || ||||||||  |||  ||||||||||||||||||||||    
T  33502994 tgtaaaattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagcta 33502915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 1977046 - 1976942
Alignment:
Q  182 ttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattga 281  Q
    ||||||||||||||| | || |||| ||||||| | | | |||||||||||| |||||||| || |||   |||||||||||||||||||||  ||||||    
T  1977046 ttccacttttggaggagccaaaattgattctagaggtttgaaattgattttgacatgtttgctttcttaaaagtagaattgattttgtctccaaaattga 1976947  T
Q  282 ttcta 286  Q
    |||||    
T  1976946 ttcta 1976942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 297
Target Start/End: Complemental strand, 3476625 - 3476496
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttg--tcatgtttggttgctttggagtagaattgatttt 267  Q
    ||||||||||||||||||||||||| | | |   ||| ||||||| | |||| |||||||||||    |||||| |||||| | ||||| ||||||||||    
T  3476625 gtgtatgtttggttccacttttggaagagccgatatttattctagaggtgtagaattgattttgatatatgtttcgttgctctcgagtaaaattgatttt 3476526  T
Q  268 gtctccgtaattgattctaacttgaagcta 297  Q
    | ||||  ||||||||||||||| ||||||    
T  3476525 gcctccagaattgattctaacttaaagcta 3476496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 3654786 - 3654724
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgatttt 232  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||   |||| ||||||||||    
T  3654786 gtgtatgtttggttccacttttggaggaggcataattgattctagcagtgtagaattgatttt 3654724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 7630361 - 7630411
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    ||||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttgcctcc 7630411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 11510898 - 11510972
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    ||||| |||||  |||||||| || ||| ||||||||||||||||| |||| || ||||||||| ||||||||||    
T  11510898 aattggttttgatatgtttggatgttttcgagtagaattgattttgcctccatatttgattctatcttgaagcta 11510972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 318
Target Start/End: Original strand, 31453337 - 31453422
Alignment:
Q  232 tgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattct 318  Q
    ||||||||||||||| | | |||||||||| |||||| |||  ||||||||||| |||||||||||  ||||||  |||||||||||    
T  31453337 tgtcatgtttggttgatgttgagtagaatttattttgcctctataattgattct-acttgaagctaaaatttgttccttttgattct 31453422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 42740917 - 42741017
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||| ||||||||||| ||||||  || ||||| || ||| | ||| |||  |||| |||||||||||| |||||||||| |||||||| ||||||||||    
T  42740917 tgtagaattgattttgacatgttccgtagctttcgaataggactgaattttcctccataattgattcta-cttgaagctaagatttgtagcttttgattc 42741015  T
Q  318 ta 319  Q
    ||    
T  42741016 ta 42741017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 36987257 - 36987181
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaag 294  Q
    |||| ||||||||||| ||||||||| | |||| ||||| |||||||||||  |||  || ||||||||||||||||    
T  36987257 tgtagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattctaacttgaag 36987181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 265
Target Start/End: Complemental strand, 15221028 - 15220933
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    ||||||||||| ||||||||||| ||| || | |||| ||||||| ||| ||||||| ||||||  ||| ||||||||| |  | |||||||||||    
T  15221028 gtgtatgtttgattccacttttgaaggagggaaaattgattctagagatataaaattaattttgaaatgcttggttgctctcaaatagaattgatt 15220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 245
Target Start/End: Original strand, 42982446 - 42982521
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    |||||||||||||||||||||||||||   |  |||||||||||   ||||| || |||||||| |||||||||||    
T  42982446 gtgtatgtttggttccacttttggaggaatccaaattaattctaaacatgtagaactgattttgacatgtttggtt 42982521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 680412 - 680344
Alignment:
Q  228 attttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||||| ||||||| |||||||| || ||||| |||||||| ||||  |||||||||| |||||||||||    
T  680412 attttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattct-acttgaagcta 680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Original strand, 7630100 - 7630168
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaa 287  Q
    |||||||||||||||| ||| |||| || || | ||||||||||| ||||| |||| |||||||||||||    
T  7630100 tgtaaaattgattttgacat-tttgattcctctagagtagaattggttttgcctccataattgattctaa 7630168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 2002835 - 2002740
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    ||||||| ||| |||  |||||||||||  |||||||||||||||| ||||  |  ||||||| ||||||||||| ||||||||  |||| ||||||    
T  2002835 aattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattct-acttgaagctaggatttgtagtttttcattcta 2002740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 4908737 - 4908817
Alignment:
Q  226 tgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgta 306  Q
    |||||||| ||||||||  || ||| ||||||||||||||||| || |  |||| |||||||||| ||||||  |||||||    
T  4908737 tgattttgacatgtttgtatgttttcgagtagaattgattttgccttccgaatttattctaacttaaagctaaaatttgta 4908817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 42907006 - 42906966
Alignment:
Q  228 attttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||||||||||||||||||| | ||||||||||| |||||    
T  42907006 attttgtcatgtttggttgctctcgagtagaattggttttg 42906966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 43717235 - 43717307
Alignment:
Q  171 tgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttgg 243  Q
    |||| |||||||| ||||||||||||||  | |||| |||||||   |||| ||||||||||| |||||||||    
T  43717235 tgtacgtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttgg 43717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 44505891 - 44505959
Alignment:
Q  243 gttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttt 311  Q
    |||||| | ||||| ||||||||||| |||| |||||| ||||| ||| |||| | |||||||||||||    
T  44505891 gttgctcttgagtaaaattgattttgcctccataattgtttctatcttaaagccaggatttgtaacttt 44505959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 44810374 - 44810410
Alignment:
Q  278 ttgattctaacttgaagctatgatttgtaacttttga 314  Q
    |||||||||||||||||||| |||||||| |||||||    
T  44810374 ttgattctaacttgaagctaggatttgtagcttttga 44810410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 37684345 - 37684445
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||||||||||||  |  ||||||||||| | ||||||||||||||||||||||||  |||||||||| |||||||| || |||||||  ||||||||||    
T  37684345 tgtaaaattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattct-acttgaagttaggatttgtggcttttgattc 37684443  T
Q  318 ta 319  Q
    ||    
T  37684444 ta 37684445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 32927849 - 32927929
Alignment:
Q  235 catgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
    ||||||||||||||||  |||||||||||||||| |||  || |||||||| ||||||||||| |||||||| |||||||||    
T  32927849 catgtttggttgctttccagtagaattgattttgcctcaatagttgattct-acttgaagctaggatttgtagcttttgatt 32927929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 223 - 304
Target Start/End: Original strand, 42455857 - 42455937
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttg 304  Q
    ||||||||||| |||||||||||||||| |||||| ||||||| || |||| ||||||||||| |||||| ||||| |||||    
T  42455857 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctataatttg 42455937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 314
Target Start/End: Complemental strand, 11791875 - 11791783
Alignment:
Q  222 aaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttga 314  Q
    |||||||||||| ||||||||||||| || || || |||||| |||| |||| ||| |||||||| ||| |||||| |||||||| |||||||    
T  11791875 aaattgattttggcatgtttggttgcctttgaatataattgaatttgcctccataactgattctaccttcaagctaggatttgtagcttttga 11791783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 4554226 - 4554351
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||||||| | ||||||| | | |  |||| ||||||| | |||||||||||||||| ||  ||| |||||| |  |||| ||||||||||||    
T  4554226 gtgtatgtttggttcaaattttggatgagcctaaattgattctagaggtgtaaaattgattttgacacatttagttgctctctagtataattgattttgt 4554325  T
Q  270 ctccgtaattgattctaacttgaagc 295  Q
    |||   ||||||||||| ||||||||    
T  4554326 ctcaagaattgattctatcttgaagc 4554351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 266
Target Start/End: Complemental strand, 39648335 - 39648242
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattt 266  Q
    ||||||||||| ||||||| |||| | || |||| ||||||| |||||| ||||||||||| ||||||||||| || |  |||| |||||||||    
T  39648335 tatgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttggtttctctatagtaaaattgattt 39648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 273
Target Start/End: Original strand, 41614736 - 41614839
Alignment:
Q  170 gtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgt 269  Q
    ||||||||||||||||| || || ||| | || |||| ||||||| | | |||||||||||||| | ||||||| || |||  ||||||||||||||||     
T  41614736 gtgtatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaattgattttgacttgtttggatggtttcaagtagaattgattttgc 41614835  T
Q  270 ctcc 273  Q
    ||||    
T  41614836 ctcc 41614839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 7533696 - 7533791
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctc 272  Q
    |||||||||||||||||||||||| | || |||||||||| | | |||| |||      || ||||||||||||||||  ||||||||||||||||||||    
T  7533696 tatgtttggttccacttttggaggggccaaaattaattctggaggtgtagaatcc----tgacatgtttggttgctttcaagtagaattgattttgtctc 7533791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 319
Target Start/End: Complemental strand, 4663027 - 4662948
Alignment:
Q  239 tttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||||| |  ||||||||||||||  |||| |||| |||||| |||||||||| |||||||| |||||| |||||    
T  4663027 tttggttgctttcggatagaattgattttgcatccggaatttattcta-cttgaagctaggatttgtagcttttgtttcta 4662948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 7720125 - 7720185
Alignment:
Q  226 tgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattcta 286  Q
    |||||||||||| ||||||| |||| ||||| |||||||||||||| |  |||||||||||    
T  7720125 tgattttgtcatatttggttactttcgagtataattgattttgtctacaaaattgattcta 7720185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 24776283 - 24776211
Alignment:
Q  173 tatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    |||||||||||||||||||||| | |||  |||| ||||| ||| |||| |||||||||||  ||||||||||    
T  24776283 tatgtttggttccacttttggaagaggcgaaattgattctcggggtgtagaattgattttgatatgtttggtt 24776211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 5997422 - 5997352
Alignment:
Q  224 attgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaag 294  Q
    |||||||||| ||||||||| || ||| ||||| ||||||||||| |||   || ||||||||||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattctaacttgaag 5997352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 35775656 - 35775706
Alignment:
Q  255 tagaattgattttgtctccgtaattgattctaacttgaagctatgatttgt 305  Q
    ||||||||| ||||||||   ||||||||||||||||||||||| ||||||    
T  35775656 tagaattgaatttgtctctagaattgattctaacttgaagctattatttgt 35775706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 36200326 - 36200177
Alignment:
Q  169 tgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||||||||||||||||||| | ||||  |   | || ||||| ||  |||| |||||||| || |||||||| |||||    |||||||||| || ||    
T  36200326 tgtgtatgtttggttccacttctagagggagtcgagttgattctgggagtgtagaattgattatgacatgtttgcttgctggcaagtagaattgtttatg 36200227  T
Q  269 tctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||  ||||||||| ||||||||| ||||||||||   |||||||||||    
T  36200226 tctccagaattgattc-aacttgaagttatgatttgtcgattttgattcta 36200177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 44141160 - 44141095
Alignment:
Q  253 agtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||||||||| ||||  |||||||||| |||||||| || ||||||||  |||||||||||    
T  44141160 agtagaattgattttgcctccaaaattgattct-acttgaagttaggatttgtagtttttgattcta 44141095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 12742231 - 12742276
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    |||||||| ||  ||||||||||||||| |||||||||||||||||    
T  12742231 aattgattatggtatgtttggttgctttcgagtagaattgattttg 12742276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 31717 - 31863
Alignment:
Q  169 tgtgtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||||||||||||||||||| | |||    || |||| ||||||| | |||| |||||||| || |||||||||||| | | ||||| |||||||| ||    
T  31717 tgtgtatgtttggttccacttctagagtgaccaaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgattctg 31816  T
Q  269 tctccgtaattgattctaacttgaagctatgatttgtaacttttgatt 316  Q
     ||||  |||||||| | ||||||||||| |||||||| |||||||||    
T  31817 cctccaaaattgattat-acttgaagctaggatttgtagcttttgatt 31863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 38123836 - 38123746
Alignment:
Q  175 tgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    |||||||||||||||||||||| | || |||| ||||||| |||||| ||||||||||  ||||||||||| || |  |||||||||||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgatt 38123746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 17111800 - 17111862
Alignment:
Q  203 aattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    |||||||||||| |||||  |||||||| || |||||||||||||||| ||||||||||||||    
T  17111800 aattaattctagagatgtcgaattgattctgacatgtttggttgctttcgagtagaattgatt 17111862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 273
Target Start/End: Original strand, 12306920 - 12306972
Alignment:
Q  221 aaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctcc 273  Q
    ||||||||||||| |||||||||||||| | ||||||||||||||||| ||||    
T  12306920 aaaattgattttgacatgtttggttgctcttgagtagaattgattttgcctcc 12306972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 203 - 319
Target Start/End: Original strand, 22195789 - 22195904
Alignment:
Q  203 aattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatt 302  Q
    |||| ||||||| | ||||||||| ||| || |||||||| ||  | | |||||||||||||| ||||  |  |||||||| || ||| |||||||||||    
T  22195789 aattgattctagaggtgtaaaattaattatgacatgtttgattattgtcgagtagaattgattatgtcctcaaaattgatttta-ctttaagctatgatt 22195887  T
Q  303 tgtaacttttgattcta 319  Q
    |||||||||||||||||    
T  22195888 tgtaacttttgattcta 22195904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 319
Target Start/End: Original strand, 40491472 - 40491618
Alignment:
Q  172 gtatgtttggttccacttttggaggtggcataattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtct 271  Q
    |||||||||||||||||| | |||||| ||||||| | | | ||| |||| |||||||| |  |||| ||||||||||| ||  | ||||||||||| ||    
T  40491472 gtatgtttggttccacttctagaggtgtcataattgaatatggggttgtagaattgattctaacatggttggttgctttcgaagataattgattttgcct 40491571  T
Q  272 ccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
     |  |||||| ||| |||||||| || | |||||| ||||||||||||    
T  40491572 tcagaattgactct-acttgaagttaagttttgtagcttttgattcta 40491618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 319
Target Start/End: Complemental strand, 41386957 - 41386860
Alignment:
Q  221 aaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattcta 319  Q
    |||||||||| || |||||||| ||||||| ||||| |||||||||   || |  ||||||||||| |||||||||| |||||||| ||||| ||||||    
T  41386957 aaaattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattcta-cttgaagctaggatttgtagcttttaattcta 41386860  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 45004965 - 45005038
Alignment:
Q  223 aattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    ||||||||||| |||||||||||||| | || |||||||||||||| || |  |||||||||| |||||||||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattct-acttgaagcta 45005038  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 296
Target Start/End: Original strand, 1063595 - 1063683
Alignment:
Q  208 attctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagct 296  Q
    |||||||  ||||||||||||| | |  ||||||| || || || |||| ||||||||||| ||||| |||||||||||| ||||||||    
T  1063595 attctagacatgtaaaattgatatcgaaatgtttgattactctgaagtaaaattgattttgactccggaattgattctaatttgaagct 1063683  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 6996460 - 6996502
Alignment:
Q  203 aattaattctagggatgtaaaattgattttgtcatgtttggtt 245  Q
    |||| ||||||||||||||||||||||| || |||||||||||    
T  6996460 aattgattctagggatgtaaaattgattctgacatgtttggtt 6996502  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 12306674 - 12306724
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    |||| ||||||||||| |||||||||||||| |  ||||||||||||||||    
T  12306674 tgtagaattgattttgacatgtttggttgctctcaagtagaattgattttg 12306724  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  276 aattgattctaacttgaagctatgatttgtaacttttgattct 318  Q
    ||||||||||| ||||||||||||||||||| |||||||||||    
T  17111855 aattgattcta-cttgaagctatgatttgtagcttttgattct 17111896  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 36270904 - 36270970
Alignment:
Q  202 taattaattctagggatgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttg 268  Q
    ||||| ||||||| | ||| ||||||||||||| |||||||||| || |  ||||||||||||||||    
T  36270904 taattgattctagaggtgtgaaattgattttgtgatgtttggtttctctctagtagaattgattttg 36270970  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 48158832 - 48158878
Alignment:
Q  219 gtaaaattgattttgtcatgtttggttgctttggagtagaattgatt 265  Q
    ||||||||||||||| |||||||||||||| | ||||| ||||||||    
T  48158832 gtaaaattgattttgacatgtttggttgctctcgagtaaaattgatt 48158878  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 40422767 - 40422828
Alignment:
Q  253 agtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttga 314  Q
    |||||||||||||||| |||   ||||||||||||||||||| || |||||||  |||||||    
T  40422767 agtagaattgattttgcctcaagaattgattctaacttgaagttaggatttgtggcttttga 40422828  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 23738 - 23638
Alignment:
Q  218 tgtaaaattgattttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagctatgatttgtaacttttgattc 317  Q
    |||||| || |||||| |||||||||||||  | || | ||||||||||||||||| ||| | |||||||| |||||||| |||||||| ||||||| ||    
T  23738 tgtaaagtttattttgacatgtttggttgccctcgaatggaattgattttgtctccataaataattctaac-tgaagctaggatttgtagcttttgaatc 23640  T
Q  318 ta 319  Q
    ||    
T  23639 ta 23638  T

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Target: scaffold0393 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 12442 - 12373
Alignment:
Q  228 attttgtcatgtttggttgctttggagtagaattgattttgtctccgtaattgattctaacttgaagcta 297  Q
    |||||| ||||||||| || | |  |||||||||||||||| ||||  || |||||||||||||||||||    
T  12442 attttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttgaagcta 12373  T

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