View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_6 (Length: 630)
Name: NF17134_high_6
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 185 - 614
Target Start/End: Complemental strand, 35159663 - 35159234
Alignment:
| Q |
185 |
aagcacctgagaaaccatgtctcaaatgcatcaaccatcaaactcaataaaccatcacagtaacatatattgttttgggatgtagtacatgcttcgagtt |
284 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35159663 |
aagcacgtgagaaaccatgtctcaaatgcatcaaccatcaaactcaataaaccatcaaaataacatatattgttttgggatgtagtacatgcttcgagtt |
35159564 |
T |
|
| Q |
285 |
tttctcaacttgataatactcctacggtcatattcaagcctatgtacatcattcacacacaaagagagtagtagttttcatttttccattgatgagataa |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35159563 |
tttctcaacttgataatactcctacggtcatattcaagcctatgtacatcattcacacacaaagagagtagtaattttcatttttccattgatgagataa |
35159464 |
T |
|
| Q |
385 |
ccatcacagtagatgacatgtcatgtttgttgcacttgcctatccacagtaggttgatgaaacattcttcgccattgtccaaagaagacgacgttgagtt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35159463 |
ccatcacagtagatgacatgtcatgtttgttgcacttgcctatccacagtaggttgatgaaacattcttcgccattgtccaaagaacacgacgttgagtt |
35159364 |
T |
|
| Q |
485 |
gttaggtgagttacttggtcgggacttagaagatttcataatgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35159363 |
gttaggtgagttacttggtcgggacttagaagatttcataatgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcc |
35159264 |
T |
|
| Q |
585 |
tcgatcatcataccaaaaccttgcagttcg |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35159263 |
tcgatcatcataccaaaaccttgcagttcg |
35159234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 35159850 - 35159737
Alignment:
| Q |
1 |
atgttccgtcataagacacatcaccaccaccggacaaagttgatatgagatttggtgg---tggttcttctcataaaccactaccgctgaatttgatatt |
97 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
35159850 |
atgttccgccataagacacatcaccaccacgggacaaagttgatatgagatttggtggtggtggttcttctgataaaccactgccgctgaatttgatatt |
35159751 |
T |
|
| Q |
98 |
gattgcataagtaa |
111 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35159750 |
gattgcataagtaa |
35159737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University