View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_high_62 (Length: 329)

Name: NF17134_high_62
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_high_62
NF17134_high_62
[»] chr1 (1 HSPs)
chr1 (1-309)||(26414022-26414327)
[»] chr2 (2 HSPs)
chr2 (155-301)||(27986655-27986795)
chr2 (155-301)||(28073187-28073327)
[»] chr8 (2 HSPs)
chr8 (14-106)||(1536650-1536743)
chr8 (231-302)||(3417101-3417170)
[»] chr7 (2 HSPs)
chr7 (231-265)||(22022568-22022602)
chr7 (231-281)||(44472480-44472527)
[»] chr4 (1 HSPs)
chr4 (231-281)||(6507907-6507954)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 26414022 - 26414327
Alignment:
Q  1 caagaaacaaattcagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacatagcagcagattcggattgtctgggatctg 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26414022 caagaaaaaaattcagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacatagcagcagattcggattgtctgggatctg 26414121  T
Q  101 cctaaaacgcgatatgggttaaattagtcaccggtggggctagcagaggctatgaaccaatcaatacattgtacaccccaaacatatcagctacgaacga 200  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  26414122 cctaaagcgcgatataggttaaattagtcaccggtggggctagcagaggctatgaaccaatcaatacattgtacaccccaaacatatgagctacgaacca 26414221  T
Q  201 aaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttcttaaattaataataaaaatacatatttgcatcagtgcaaagatatat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  26414222 aaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttcttaaat---taataaaaatacatatttgcatcagtgcaaagatatat 26414318  T
Q  301 acaccgcaa 309  Q
    |||||||||    
T  26414319 acaccgcaa 26414327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 27986795 - 27986655
Alignment:
Q  155 aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct 254  Q
    |||||||||||||||||||| |  |||||| |||||||| |||| |||||||||||||| |||||||  |      || |||| ||||||||| || |||    
T  27986795 aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggt---gggaggatcacagttcttgtaatgtct 27986699  T
Q  255 taaattaataataaaaatacatatttgcatcagtgcaaagatatata 301  Q
    |||||   ||||||||||||||||||| || ||||||||||||||||    
T  27986698 taaat---taataaaaatacatatttgtataagtgcaaagatatata 27986655  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 301
Target Start/End: Complemental strand, 28073327 - 28073187
Alignment:
Q  155 aaccaatcaatacattgtacaccccaaacatatcagctacgaacgaaaatgaaaatcatctgcattaatttaacacagtatcatagttcttgtcatttct 254  Q
    |||||||||||||||||||| |  |||||| |||||||| |||| |||||||||||||| |||||||  |      || |||| ||||||||| || |||    
T  28073327 aaccaatcaatacattgtacgcaacaaacagatcagctaagaaccaaaatgaaaatcatttgcattaggt---gggaggatcacagttcttgtaatgtct 28073231  T
Q  255 taaattaataataaaaatacatatttgcatcagtgcaaagatatata 301  Q
    |||||   ||||||||||||||||||| || ||||||||||||||||    
T  28073230 taaat---taataaaaatacatatttgtataagtgcaaagatatata 28073187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 1536650 - 1536743
Alignment:
Q  14 cagacttgaggattatcgtatggcacaggctgcaggttctataattagctatggacata-gcagcagattcggattgtctgggatctgcctaaa 106  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||||||  |||||| |||||  ||||| ||||  ||||||| |||||||    
T  1536650 cagacttgaggattattatatggcacaggcggcaggttccataattagctacagacataggcagcctattcgaattgattgggatccgcctaaa 1536743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 3417101 - 3417170
Alignment:
Q  231 agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttgcatcagtgcaaagatatatac 302  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||||| ||   |||||| ||||||||    
T  3417101 agtagcatagttcttgtcatttcttaaattaata--aaaaatacatatttgtatagatgcaaatatatatac 3417170  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 22022602 - 22022568
Alignment:
Q  231 agtatcatagttcttgtcatttcttaaattaataa 265  Q
    |||| ||||||||||||||||||||||||||||||    
T  22022602 agtagcatagttcttgtcatttcttaaattaataa 22022568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 44472527 - 44472480
Alignment:
Q  231 agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg 281  Q
    |||| ||| ||||||||||||||||||||||   |||||||||||||||||    
T  44472527 agtagcatggttcttgtcatttcttaaatta---ataaaaatacatatttg 44472480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 6507907 - 6507954
Alignment:
Q  231 agtatcatagttcttgtcatttcttaaattaataataaaaatacatatttg 281  Q
    |||| ||| ||||||||||||||||||||   |||||||||||||||||||    
T  6507907 agtagcatggttcttgtcatttcttaaat---taataaaaatacatatttg 6507954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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