View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_75 (Length: 299)
Name: NF17134_high_75
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_75 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 36041031 - 36040775
Alignment:
| Q |
12 |
atgaaagtaaaaagtgattgattgagttgatttgcaatattattaatctagctgtcttattttgttgccaacaagtagactgaaaaagctactatagcag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36041031 |
atgaaagtaaaaagtgattgattgagttgatttgcaatattattaatctagctgtcttattttgttgccaacaagtagactgaaaaagctactatagcag |
36040932 |
T |
|
| Q |
112 |
aggtatatactgcatgaatgactatgagggtaagttttcagagaatcaattgttaattgatacaaaggttagttgccgacatgaaataaaatgaggttat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36040931 |
aggtatatactgcatgaatgactatgagggtaagttttcagagaatcaattgttaattgatacaaaggttagttgccgacatgaaataaaatgaggttat |
36040832 |
T |
|
| Q |
212 |
gaaaagtttacacatttttattgaaaatgattcattatacacgaagaccaacttaga |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
36040831 |
gaaaagtttacaaatatttattgaaaatgattcattagacaagaagaccaaattaga |
36040775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University