View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_8 (Length: 604)
Name: NF17134_high_8
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Original strand, 49437264 - 49437858
Alignment:
| Q |
8 |
cgaaaaatatagagtgtatttacttgtactcaaaaaacagagctgtggaccgatgagctaaccaaggctaaaaaactattttaaaacataaggatctttc |
107 |
Q |
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| T |
49437264 |
cgaacaatatagagtgtattttcttgaactcaaaaaacagagctgtggaccgatgagctaaccaagggtaaaaaactattttaaaacataaagatctttc |
49437363 |
T |
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| Q |
108 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
207 |
Q |
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| T |
49437364 |
aaatggaagatcttattgagatagaattcaaagttgcatatgtgtagtttataaatgatcctaagactatacatgatcatcccctttgttttacctctaa |
49437463 |
T |
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| Q |
208 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccnnnnnnntggaaagttgtagactt |
307 |
Q |
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| T |
49437464 |
caaatggataaagtcatacacaaggtcaacaaatttaattgaagtatgataaatggattcaacaaatttataaaccaaaaaa-tggaaagttgtagactt |
49437562 |
T |
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| Q |
308 |
aatttcggtaacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttaatgacaatcaag |
407 |
Q |
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| T |
49437563 |
aatttcggtaacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaatttcatgacaatcaag |
49437661 |
T |
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| Q |
408 |
gtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagtataacttcaca |
507 |
Q |
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| T |
49437662 |
gtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatttagtataacttcaca |
49437761 |
T |
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| Q |
508 |
tataggagagacccttgggcgtaaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttgcattcttc |
604 |
Q |
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| T |
49437762 |
tataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaactcttgcattcttc |
49437858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Complemental strand, 43362474 - 43362425
Alignment:
| Q |
497 |
ataacttcacatataggagagacccttgggcgtaaggataattctctttc |
546 |
Q |
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| T |
43362474 |
ataacttcacatgtaggagaggcccttggacataaggacaattctctttc |
43362425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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