View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_84 (Length: 273)
Name: NF17134_high_84
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_84 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 42467006 - 42467271
Alignment:
| Q |
1 |
acgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttctta |
100 |
Q |
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| T |
42467006 |
acgtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttctta |
42467105 |
T |
|
| Q |
101 |
ccaagcatttgcaacacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42467106 |
ccaagcatttgcaacacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaac |
42467205 |
T |
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| Q |
201 |
tggggtgctggaataacctattccacacatgtcaattttcattgaagtatgttgccatctgtgctc |
266 |
Q |
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| T |
42467206 |
tggggtgctggactaacctattccacacatgtcaattttcattgaagtatgttgccatcagtgctc |
42467271 |
T |
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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 3183707 - 3183511
Alignment:
| Q |
3 |
gtgatgaatgtgggaggtggaggtgatatagcaaacatgtgggttaaaggaagtagaacaggatggattagcatgagccacaattggggtgcttcttacc |
102 |
Q |
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|||||||| || ||||||||||| ||||| | | |||| ||| |||||||| |||||||||||||||| |||||||| || ||||||||||| |||| |
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| T |
3183707 |
gtgatgaacgtcggaggtggaggagatatgtcgagcatgatggtgaaaggaagcagaacaggatggattaagatgagccataactggggtgcttcctacc |
3183608 |
T |
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| Q |
103 |
aagcatttgcaacacttagtggccaaactctttctttcaagattacttcttacacaaccaaagaaactataatagcttggaatgttgctccttccaa |
199 |
Q |
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|||||||||||||||| |||| ||| |||||||||||| | ||||||| ||||| || || || ||||| || || |||||||||||||||||||| |
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| T |
3183607 |
aagcatttgcaacactaggtggtcaagctctttctttcaggcttacttcatacaccactaaggagactattattgcatggaatgttgctccttccaa |
3183511 |
T |
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