View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_87 (Length: 266)
Name: NF17134_high_87
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 11069234 - 11068995
Alignment:
| Q |
18 |
ataaattattatataaagtcttagactttatatatcttagtttgatctttgtgcaatgacaaaatgtggtgtaatatatgtggttattatgtaatttata |
117 |
Q |
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| T |
11069234 |
ataaattattatattaagtcttagactttatatatcttagtttgatttttgtgcaatgacaaaatgcggtgtaatatatgtggttattatgtaatttata |
11069135 |
T |
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| Q |
118 |
ataatgacagctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgcagaaatatttattctttattattttaggtttggtattgt |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
11069134 |
-taatgacacctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgcagaaatatttattctttattattctaggtttgatattgt |
11069036 |
T |
|
| Q |
218 |
tgtgtgtttaggttagcttcattcaacatattgattcattt |
258 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |
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| T |
11069035 |
tgtgtgtttaagttagcttcattcaacatattgattcattt |
11068995 |
T |
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