View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_high_9 (Length: 593)
Name: NF17134_high_9
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 52 - 593
Target Start/End: Complemental strand, 39976079 - 39975538
Alignment:
| Q |
52 |
ggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaactgcagtaacatatagtttaagca |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39976079 |
ggtgttttgtttgtatgcacacataggacattgttggatcctgttttcttaagcacatcattagcaaagccattaactgcagtaacatatagtttaagca |
39975980 |
T |
|
| Q |
152 |
aagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgattt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39975979 |
aagtttctgagttcatagcaccaataaaaacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgattt |
39975880 |
T |
|
| Q |
252 |
agttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39975879 |
agttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatg |
39975780 |
T |
|
| Q |
352 |
aatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39975779 |
aatactcatgtcagcatgttttatgggaccacagcaagcggattgaagtgtttggatcctatttttttcttgatgaatcctaagccaagttatcatattc |
39975680 |
T |
|
| Q |
452 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39975679 |
aaattcttgggaaggtacctaaagaacttacatgtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgag |
39975580 |
T |
|
| Q |
552 |
gtttgagtgtacaaattttactaggagggataagtatatgat |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39975579 |
gtttgagtgtacaaattttactaggagggataagtatatgat |
39975538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 25552961 - 25552899
Alignment:
| Q |
259 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
321 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || ||| ||||||||||| | |||||||||||| |
|
|
| T |
25552961 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
25552899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 185 - 593
Target Start/End: Complemental strand, 16147724 - 16147316
Alignment:
| Q |
185 |
tgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagaga |
284 |
Q |
| |
|
|||| |||||||| || ||| |||||||| | ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
16147724 |
tgagtttaacaagggatagagaacaagatagggaaacaatgcaaaggttgttaagtgaaggtgatttagttgtttgtcctgaaggaacaacttgtaggga |
16147625 |
T |
|
| Q |
285 |
accatatttgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccaca |
384 |
Q |
| |
|
||| ||||| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||| |
|
|
| T |
16147624 |
accttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttccagtggctatgaatgttaatgtgagtatgttttatggtacaaca |
16147525 |
T |
|
| Q |
385 |
gcaagcggattgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacat |
484 |
Q |
| |
|
|| || ||||| || |||||||| || ||||||||||| ||| |||||| ||||| || | |||| |||||||| |||||||| || | |
|
|
| T |
16147524 |
gctagtggattaaaatgtttggactcttttctatttttgatgaatccatggcctagttataatattgaagtacttgaaaaggtaccaaaagaactcactt |
16147425 |
T |
|
| Q |
485 |
gtgctggaggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataa |
584 |
Q |
| |
|
||||||| ||||| || | |||||||||||||||||||||| | | | |||||||||||||| ||||||||||||||||| |||| ||||||||||| |
|
|
| T |
16147424 |
gtgctggtggaaaatctccttttgaagtggctaattatatacaaagagagttgggtgatgctttagggtttgagtgtacaaatattacaaggagggataa |
16147325 |
T |
|
| Q |
585 |
gtatatgat |
593 |
Q |
| |
|
|||||||| |
|
|
| T |
16147324 |
atatatgat |
16147316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 193 - 593
Target Start/End: Original strand, 16195219 - 16195619
Alignment:
| Q |
193 |
acaagagacagaaaacaagatggtgaaacaatgcaaaagttactaagagaaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatt |
292 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||| ||| || || ||||||||||||||||| || |||||||||||||| ||||| ||||| |||| |
|
|
| T |
16195219 |
acaagagacagagaacaagatagggaaacaatgcaaaggttgcttagggaaggtgatttagttgtgtgccctgaaggaacaacttgtagggaaccttatt |
16195318 |
T |
|
| Q |
293 |
tgttaaggtttagttcattgtttgctgagttggctaatgagatagtgcctgtggcaatgaatactcatgtcagcatgttttatgggaccacagcaagcgg |
392 |
Q |
| |
|
| ||||||||||||||| | |||||||| | ||| ||||||| || || ||||| |||||| | |||| || ||||||||||| || ||||| || || |
|
|
| T |
16195319 |
tattaaggtttagttcactttttgctgaaattgctgatgagattgttccagtggctatgaatgataatgtgagtatgttttatggtacaacagctagtgg |
16195418 |
T |
|
| Q |
393 |
attgaagtgtttggatcctannnnnnncttgatgaatcctaagccaagttatcatattcaaattcttgggaaggtacctaaagaacttacatgtgctgga |
492 |
Q |
| |
|
||| || |||||||| ||| ||||||||||| |||||||||| | ||| |||| |||| || || || |||||||| || |||||||| |
|
|
| T |
16195419 |
attaaaatgtttggacccttttctatttttgatgaatccatggccaagttataacattgaaatgcttgataaagttccaaaagaactcacttgtgctggt |
16195518 |
T |
|
| Q |
493 |
ggaaagtcaagtgttgaagtggctaattatatacagaaacaattgggtgatgctttgaggtttgagtgtacaaattttactaggagggataagtatatga |
592 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||| ||||| ||||||||||| | |||||||| || ||| |||| ||||||||||| ||||||| |
|
|
| T |
16195519 |
ggaaagtctccttttgaagtggctgattatatacagaaagaattgagtgatgctttgggatttgagtgcaccaatattacaaggagggataaatatatga |
16195618 |
T |
|
| Q |
593 |
t |
593 |
Q |
| |
|
| |
|
|
| T |
16195619 |
t |
16195619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 50133656 - 50133706
Alignment:
| Q |
180 |
aacagtgagattaacaagagacagaaaacaagatggtgaaacaatgcaaaa |
230 |
Q |
| |
|
|||||||||||||| ||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
50133656 |
aacagtgagattaataaggggcagaaaataagatggtgaaacaatgcaaaa |
50133706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 38792363 - 38792285
Alignment:
| Q |
242 |
aaggtgatttagttgtttgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctga |
320 |
Q |
| |
|
|||| ||| ||||||| ||||| ||||| || || ||||||||||| ||||| ||||||||||| || |||||| |||| |
|
|
| T |
38792363 |
aaggggatgtagttgtgtgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 28538603 - 28538651
Alignment:
| Q |
61 |
tttgtatgcacacataggacattgttggatcctgttttcttaagcacat |
109 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||| ||||||||| |
|
|
| T |
28538603 |
tttgtatgcacacataggacacttttggatccagttttcctaagcacat |
28538651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University