View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_high_95 (Length: 251)
Name: NF17134_high_95
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_high_95 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 6929112 - 6929339
Alignment:
| Q |
1 |
catatgaaattaataagaggaggaaacaaatatgaaaattttccctatcgaaataaagggtgagattttaacgatgatggataacataaaaatagtgtaa |
100 |
Q |
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| T |
6929112 |
catatgaaattaataagaggaggaaacaaatatgaaaattttccctatcgaaataaagggtgagattttaacgatgatggataacataaaaatagtgtaa |
6929211 |
T |
|
| Q |
101 |
tattatttattaagatataacatgagagatagagatagagagggaattacctgagcttgtttcaagatcgatcaccaa-----------caatgaatgaa |
189 |
Q |
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| T |
6929212 |
tattatttattaagatataacatgagagatagagatagagagggaattacctgagcttgtttcaagatcgatcaccaaaaagagtgagtaaatgaatgaa |
6929311 |
T |
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| Q |
190 |
gaaagaaagggctgtaaaagagaagcac |
217 |
Q |
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| T |
6929312 |
gaaagaaaggtctgtaaaagagaagcac |
6929339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 35 - 217
Target Start/End: Complemental strand, 6487991 - 6487785
Alignment:
| Q |
35 |
aaaattttccctatcgaaataaagggtgagattttaacgatgatggataacataaaaatagtgtaatattattta-ttaagatataacatgagaga---- |
129 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6487991 |
aaaattttctctatcgaaataaacggtgagattttaacgatgatagataacataaaaatagtgtaatattatttatttaagatataacatgagagataga |
6487892 |
T |
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| Q |
130 |
--------tagagatagagagggaattacctgagcttgtttcaagatcgatcaccaac-----------aatgaatgaagaaagaaagggctgtaaaaga |
210 |
Q |
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| T |
6487891 |
gatagagctagagatagagagggaattacctgagtttgtttcaagatcgatcaccaacaagagtgagtgaatgaatgaagaaagaaagggctgtaaaaga |
6487792 |
T |
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| Q |
211 |
gaagcac |
217 |
Q |
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||||||| |
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| T |
6487791 |
gaagcac |
6487785 |
T |
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