View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_103 (Length: 249)
Name: NF17134_low_103
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 21132169 - 21132408
Alignment:
| Q |
1 |
ataacaaacagaagtaaaaaatatttgcaggaactgcggtaggattaaaagattggattcgtattacttttgcagccgatccatctgctctcagagatgg |
100 |
Q |
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| T |
21132169 |
ataacaaacagaagtgaaaaatatttgcaggaactgcggtaggattaaaagattggattcgtattacttttgcagccgatccatctgctctcagagatgg |
21132268 |
T |
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| Q |
101 |
tatgcaaaggataaagtcattctctcaaagacacgcgagaaaacagtaaaatcgaacaatggtgaattaacaaattaggtgtctgctaagcatgcattat |
200 |
Q |
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| T |
21132269 |
tatgcaaaggataaagtcattctctcaaagacacgcgagaaaacagtaaaatcgaacaatggtgaataaacaaattaggtgtctgcaaagcatgtattat |
21132368 |
T |
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| Q |
201 |
a-ttccttggacactgtctcatgctaaaggttgcattcat |
239 |
Q |
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| T |
21132369 |
atttccttggacactttctcatgctaaaggttgcattcat |
21132408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30454789 - 30455024
Alignment:
| Q |
1 |
ataacaaacagaagtaaaaaatatttgcaggaactgcggtaggattaaaagattggattcgtattacttttgcagccgatccatctgctctcagagatgg |
100 |
Q |
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| T |
30454789 |
ataacaaacaaaaatgaaaaatattcgtaggaaatgcagtaggtttaaaagattggattcataatacttttgcagctaatccatttgttctcatagatgg |
30454888 |
T |
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| Q |
101 |
tatgcaaaggataaagtcattctctcaaagacacgcgagaaaacagtaaaatcgaacaatggtgaattaacaaattaggtgtctgctaagcatgcattat |
200 |
Q |
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| T |
30454889 |
tattaaaagaataaagtcattctctcaaagacatgcgagaaaacagtaaaatcaaacaacgatgaataaacaaataaggtgtatgttaggcatgtgttat |
30454988 |
T |
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| Q |
201 |
attccttggacactgtctcatgctaaaggttgcatt |
236 |
Q |
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| T |
30454989 |
gttccgtggacactaacttgtgctaaaggttgcatt |
30455024 |
T |
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