View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_105 (Length: 246)
Name: NF17134_low_105
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_105 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 15658552 - 15658344
Alignment:
| Q |
19 |
caaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagggtggcttaaatccta |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15658552 |
caaacagctctgtgtgcttccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagagtggcttaaatccta |
15658453 |
T |
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| Q |
119 |
taccatgctttgcaacaagttcaaacatcttaaaatattcatcagaccttgcaacattaaacggaatagcattattgt-nnnnnnngagagcaatagcct |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
15658452 |
taccatgctttgcaacaagttcaaacatcttaagatattcatcagaccttgcaacattaaacgaaatagcattattgtaaaaaaaagagagcaatagcct |
15658353 |
T |
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| Q |
218 |
tacaagcat |
226 |
Q |
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||||||||| |
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| T |
15658352 |
tacaagcat |
15658344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 244483 - 244274
Alignment:
| Q |
19 |
caaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagggtg--gcttaaatcc |
116 |
Q |
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||||||||||| ||| ||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
244483 |
caaacagctctatgtcctgccaaatccttactaatttcaccatataaataatccaaatatttagctctaatctcatgataagagggtgtggcttaaatcc |
244384 |
T |
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| Q |
117 |
tataccatgctttgcaacaagttcaaacatcttaaaatattcatcagaccttgcaacattaaacggaatagcattattgtnnnnnnngagagcaatagcc |
216 |
Q |
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| T |
244383 |
tataccatgctttgcaacatattcaaacatcttaaaatactcatcagaccttgcaacatcaaatggaataacattattgtaaaaagagagagcaatagcc |
244284 |
T |
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| Q |
217 |
ttacaagcat |
226 |
Q |
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|||||||||| |
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| T |
244283 |
ttacaagcat |
244274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 246010 - 246217
Alignment:
| Q |
19 |
caaacagctctgtgtgctgccaaatccttaccaatttcaccataaaaataattcaaatatttatttctaatctcatcataagagggtggcttaaatccta |
118 |
Q |
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|||||| |||| ||| ||| ||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| || |
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| T |
246010 |
caaacaactctatgtcctgtcaaatccttactaatttcaccatagaaataatccaaatatttaactctaatctcatgataagagggtggcttaaatatta |
246109 |
T |
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| Q |
119 |
taccatgctttgcaacaagttcaaacatcttaaaatattcatcagaccttgcaacattaaacggaatagcattattgtnnnnnnngagagcaatagcctt |
218 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||| |||||| ||||||||| |||||||||||||| |
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| T |
246110 |
aaccatgctttgcaacatattcaaacatcttaaaatactcatcagagcttgcaccattaaatggaataacattattgtaaaaaaggagagcaatagccta |
246209 |
T |
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| Q |
219 |
acaagcat |
226 |
Q |
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|||||||| |
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| T |
246210 |
acaagcat |
246217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 4370419 - 4370465
Alignment:
| Q |
71 |
tcaaatatttatttctaatctcatcataagagggtggcttaaatcct |
117 |
Q |
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| T |
4370419 |
tcaaatatttccctctaatctcatcataagacggtggcttaaatcct |
4370465 |
T |
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