View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_108 (Length: 243)
Name: NF17134_low_108
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 7737370 - 7737144
Alignment:
| Q |
1 |
tgtctagaaattaatgacaaacaagcacacaaaaacaaagaaatgaaggtgtgtttcagttaatcgttgtaggacacacattttcttaggcaggaatggt |
100 |
Q |
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| T |
7737370 |
tgtctataaattaatgacaaacaagcacacagaaacaaagaaatgaaggtgtgtttcagttaatcgttgtaggacacacattttcttaggcaggaatggt |
7737271 |
T |
|
| Q |
101 |
tggggaacaaggttgaattatgcattaattaataactcaagttccttgaacctttttcaatttttgttgtaatttttaagcaaggaatattgtacgaaca |
200 |
Q |
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| T |
7737270 |
tggggaacaaggttgaattatgcattaattaataactcaagttccttgaacc-ttttcaatttttgttgtaattattaagcaaggaatattgtacgaaca |
7737172 |
T |
|
| Q |
201 |
agttaccacttgaataatggttatattt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
7737171 |
agttaccacttgaataatggttatattt |
7737144 |
T |
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