View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_110 (Length: 241)
Name: NF17134_low_110
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_110 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38269193 - 38269416
Alignment:
| Q |
1 |
cagacaatggtttatgagtcacaggatctatacctttttgcctcagtctcttcttcaaacaagagttccatagattctttatttcattgtcagtcctccc |
100 |
Q |
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| T |
38269193 |
cagacaatggtttatgagtcacaggatctatacctttttgcctcagtctcttcttcaaacaagagttccatagattctttatttcattgtcagtcctccc |
38269292 |
T |
|
| Q |
101 |
cggcaattgcgccgcaatttgagaccatctgataagaagaaaatgaacataattttttaaaacggacggtattagtattgttagtattatacctagagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269293 |
cggcaattgcgccgcaatttgagaccatctgataagaagaaaatgaacataattttttaaaacggacggtattagtattgttagtattatacctagagtg |
38269392 |
T |
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| Q |
201 |
agatcgaatcctcgacctccttat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
38269393 |
agatcgaatcctcgacctccttat |
38269416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 37963139 - 37963053
Alignment:
| Q |
48 |
ctcttcttcaaacaagagttccatagattctttatttcattgtcagtcctccccggcaattgcgccgcaatttgagaccatctgata |
134 |
Q |
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|||||||| | ||| || ||||||||||| || || ||||||||||| || || || ||||| || ||||| ||||||||||||||| |
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| T |
37963139 |
ctcttcttgagacatgaattccatagatttttaatctcattgtcagttcttcctggtaattgtgctgcaatctgagaccatctgata |
37963053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 45438425 - 45438303
Alignment:
| Q |
8 |
tggtttatgagtcacaggatctatacctttttgcctcagtctcttcttcaaacaagagttccatagattctttatttcattgtcagtcctccccggcaat |
107 |
Q |
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| T |
45438425 |
tggtttatgagtgacagggtctatacccttttgtctcagtttcttctttaagcaagaattccaaagattctttatttcattatcagtcctccctggcaat |
45438326 |
T |
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| Q |
108 |
tgcgccgcaatttgagaccatct |
130 |
Q |
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|| || |||||||| |||||||| |
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| T |
45438325 |
tgtgcagcaatttgtgaccatct |
45438303 |
T |
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