View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_low_113 (Length: 239)
Name: NF17134_low_113
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_113 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 38089092 - 38088872
Alignment:
| Q |
19 |
gctgtttagtgaaatttagagaaagaaccactgtttatataatgtaagagcagaagtgatggaggaaaattgtagaattagcaataatggcatttatttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089092 |
gctgtttagtgaaatttagagaaagaaccactgtttatataatgtaagagcagaagtgatggaggaaaattgtagaattagcaataatggcatttatttt |
38088993 |
T |
|
| Q |
119 |
taggtttatactatggtttaaacaaaacaaaaccgttacaagcaatttgcaaagaacattagaataacctatgcattttccagaactaattaaggaatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38088992 |
taggtttatactatggtttaaacaaaacaaaaccgttacaagcaatttgcaaagaacattagaataacctatgcattttccagaactaattaaggaatgt |
38088893 |
T |
|
| Q |
219 |
ttaaatgctacgcacactgtc |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38088892 |
ttaaatgctacgcacactgtc |
38088872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University