View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_114 (Length: 239)
Name: NF17134_low_114
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_114 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19552360 - 19552580
Alignment:
| Q |
1 |
tgagatttttgccgctgctgtcccgcttactctttcagtagagcacgttgacgttcatgcgtcctccaaattacatttgtatgcttctggtacaatgaag |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
19552360 |
tgagatttctgccgctgctgtcccgcttactctttcagtagagcacgttgacgttcatgagtactccaaattacatttgtatgcttctggtacaatgaag |
19552459 |
T |
|
| Q |
101 |
agtcccgcccaacacaagaacgcacattgagatacgcacatcacctctcatgcaggtttgtccgcaagtccagttggcattgtttctgctgctgatgacc |
200 |
Q |
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|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19552460 |
agtcccgcccaacacaagaatgcacattgagatgcgcacatcacctctcatgcagatttgtccgcaagtccagttggcattgtttctactgctgatgacc |
19552559 |
T |
|
| Q |
201 |
aagagcagcgctcggtacaac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
19552560 |
aagagcagcgctcggtacaac |
19552580 |
T |
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