View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_118 (Length: 238)
Name: NF17134_low_118
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_118 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 1565763 - 1565981
Alignment:
| Q |
20 |
agtacttgcggaaaggtatacaaacaccacgctcaatatcaagctgctccaacgcactgttattcgactttgaattactaggcagctgcaacggcctcac |
119 |
Q |
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| T |
1565763 |
agtacttgcggaaaggtatacaaacaccacgctcaatgtcaagctgctccaacgcactgttattcgactttgaattactaggcagctgcaacggcctcac |
1565862 |
T |
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| Q |
120 |
aaccgcgccgtttccagtggtggaagccaaattcgaaattcgcactctccgcactttcctctgctcgattctgggcgagagagtcgattgaggagaaact |
219 |
Q |
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| T |
1565863 |
aaccgcgccgtttccagtggtcgaagccaaattcgaaattcgcactctccgcactttcctctgctcgattctgggcgagagagtcaattgaggagaaact |
1565962 |
T |
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| Q |
220 |
gtgtacagagagttgacgc |
238 |
Q |
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| T |
1565963 |
gtgtacagagagttgacgc |
1565981 |
T |
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