View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_12 (Length: 585)
Name: NF17134_low_12
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 269 - 571
Target Start/End: Complemental strand, 46800150 - 46799848
Alignment:
| Q |
269 |
gtagctctcagaaaacacgaaatatgttcttaacactgtttcaaaaatttaagaaacctacaacagatggaaaaagttcatttcttagcataatcacttg |
368 |
Q |
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| T |
46800150 |
gtagctctcagaaaacacgaaatatgtacttaacactctttcaaaaatttaagaaacctacaacagatggaaaaagttcatttcttagcataatcacttg |
46800051 |
T |
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| Q |
369 |
aagcnnnnnnnttgttatagttgagagttattatccaaatcatctactaactttcatgttaacaacaccatggaaaaatgcttaatttggagttgatatg |
468 |
Q |
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| T |
46800050 |
aagcaaaaagattgttatagttgagagttattatccaaatcatctactaactttcaagttaacaacaccatggaaaaatgcttaatttggagttgatata |
46799951 |
T |
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| Q |
469 |
tccttatttatggggttcatgttaaatccatcattcaaacaaacttaattctagaagttctatagtatacgttatcttttgaattattagttgtgcatat |
568 |
Q |
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| T |
46799950 |
tccttatttatggggttcatgttaaatccatcattcaaacaaacttaattctagaagttctatagtatacgttatcttttgaattattagttgtgcatat |
46799851 |
T |
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| Q |
569 |
ttt |
571 |
Q |
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| T |
46799850 |
ttt |
46799848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 6 - 205
Target Start/End: Complemental strand, 46800412 - 46800214
Alignment:
| Q |
6 |
agagagatgaaaatcccataaaataagggaagccaaatcaaacgtagggcaccacatacaaccatcaacgagaactaacacacatccatccacccatgag |
105 |
Q |
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||||| ||||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46800412 |
agagaaatgaaaatcccgtaaaataagggaagtcaaatcaaacgtggggcgccacatacaaccatcaacgggaactaacacacatccatccacccatgag |
46800313 |
T |
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| Q |
106 |
aataattgaatatgcctgtcagggttagattttgtaggccacaatgttttggatatattgtgcatctcattttagacatacacaattaatcaaagtaatc |
205 |
Q |
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| T |
46800312 |
aataactgaatatg-cagtcagtgttagattttgtaggccacaatgttttggatatattgtgcatctcattttagacatacacaattaatcaaagtaatc |
46800214 |
T |
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