View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_125 (Length: 233)
Name: NF17134_low_125
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 1140399 - 1140352
Alignment:
| Q |
17 |
cataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
64 |
Q |
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| T |
1140399 |
cataggtagcatggattcacgagggcaaaaacaggaattaacaggaaa |
1140352 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Complemental strand, 1139955 - 1139927
Alignment:
| Q |
87 |
aagagtgaaggcattaacgtgagtatggg |
115 |
Q |
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| T |
1139955 |
aagagtgaaggcattaacgtgagtatggg |
1139927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 1140272 - 1140240
Alignment:
| Q |
61 |
gaaaagaaaccgtccattaaatcgtcaagagtg |
93 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
1140272 |
gaaaagaaaccgtccattaaatcgtgaagagtg |
1140240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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