View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_13 (Length: 585)
Name: NF17134_low_13
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 350 - 569
Target Start/End: Complemental strand, 4191636 - 4191427
Alignment:
| Q |
350 |
tttgaacatgaaactcaatgagacaaagagagcaacatctaggcttaagtatatttctattcatcaatagttgattaattttggtcattcaaattttaat |
449 |
Q |
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| T |
4191636 |
tttgaacatgaaactcaatgagacaaagagagcaacatctaggcttaagtatatttctattcatcaatagttg----------gtcattcaaattttaat |
4191547 |
T |
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| Q |
450 |
tgtttaaatcaaacttttgttccccacatatgtgaaagtttattcctctattctaaaatgagttactccatttggagaattagaaagaagaaaagaatga |
549 |
Q |
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| T |
4191546 |
tgtttaaatcaaacttttgttccccacatatgtgaaagtttattcctctattctaaaatgagttactccatttggagaattagaaagaagaaaagaatga |
4191447 |
T |
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| Q |
550 |
gtttgaagtgcatcaaatct |
569 |
Q |
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| T |
4191446 |
atttgaagtgcatcaaatct |
4191427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 4191973 - 4191701
Alignment:
| Q |
10 |
agatgaactaggatctcacaatgtgatgaactgatgttagaatcttacatgagaaa-gatgatattgcatttagtgtccaacacattgaaataggactga |
108 |
Q |
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| T |
4191973 |
agatgaactaggatctcacaacgtgatgaaccaatgttaaaattttacatgaaaaaagattatattgcatttagtgtccaacacattgaaataggactgg |
4191874 |
T |
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| Q |
109 |
ctctattaaacgcatagtttgacatacaataacgagtatcctatcgacannnnnnnnaaagaagtatttcaat-tttcaatgtattaaatacataaattt |
207 |
Q |
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| T |
4191873 |
ctctattaaacgcatagtttgacatacaataacgagtgtcctatcgacattttttttaaaga-----ttaagtatttcaatgtattaaatacataaattt |
4191779 |
T |
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| Q |
208 |
ttacgaaaaacttattattcaaggttattaaagaatgtttttaaaatactcgtcagtattttctatagatatattggt |
285 |
Q |
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| T |
4191778 |
ttatgaaaaacttattattcaaggttattaaagaatgtttttaaaatactcgtcagtattttctatagatatattggt |
4191701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 45566144 - 45566100
Alignment:
| Q |
173 |
tatttcaattttcaatgtattaaatacataaatttttacgaaaaa |
217 |
Q |
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| T |
45566144 |
tatttcaattttcaatgtatttattacataaatttttacaaaaaa |
45566100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 31759055 - 31759027
Alignment:
| Q |
176 |
ttcaattttcaatgtattaaatacataaa |
204 |
Q |
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| T |
31759055 |
ttcaattttcaatgtattaaatacataaa |
31759027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 16944810 - 16944846
Alignment:
| Q |
174 |
atttcaattttcaatgtattaaatacataaattttta |
210 |
Q |
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| T |
16944810 |
atttcaattttcaatgtattgaatacacaaattttta |
16944846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 17015475 - 17015511
Alignment:
| Q |
174 |
atttcaattttcaatgtattaaatacataaattttta |
210 |
Q |
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| T |
17015475 |
atttcaattttcaatgtattgaatacacaaattttta |
17015511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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