View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_130 (Length: 230)
Name: NF17134_low_130
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_130 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38269050 - 38268825
Alignment:
| Q |
1 |
ttcaatttcaccaaaagcatatgcaatggaaatggaaggttcttgcaacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38269050 |
ttcaatttcaccaaaagcatatgcaatggaaatggaaggttcttgcaacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaat |
38268951 |
T |
|
| Q |
101 |
tttccacttcaaatgagttatgcaaacactgaaaatgattgtttaccaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38268950 |
tttccacttcaaatgagttatgcaaacactgaaaatgattgtttaccaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatctt |
38268851 |
T |
|
| Q |
201 |
ttgatatgaattctgatcagtttcat |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38268850 |
ttgatatgaattctgatcagtttcat |
38268825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 212
Target Start/End: Original strand, 8204559 - 8204722
Alignment:
| Q |
46 |
caacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaattttccacttcaaatgagttatgcaaacactgaaaatgattgttta |
145 |
Q |
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||||||||||| ||| |||| ||||||||||||| |||| ||| ||| |||||| ||||||||| |||| ||| |||||||||| ||||||| |||| |
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| T |
8204559 |
caacaaagagtattttctagacaggttcattcaactctcatgtttaatgagaaattatccacttcatatgaattacacaaacactgagaatgattattta |
8204658 |
T |
|
| Q |
146 |
ccaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatcttttgatatgaatt |
212 |
Q |
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| T |
8204659 |
ccaaacgattcaaacac---tagtaatcattggttcaaccaaactagataaacttttgatatgaatt |
8204722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 46659023 - 46659187
Alignment:
| Q |
45 |
gcaacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaattttccacttcaaatgagttatgcaaacactgaaaatgattgttt |
144 |
Q |
| |
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|||||||||| | ||| |||| ||||||||||||| |||| ||| ||| |||||| ||||||||| |||| ||| |||| ||||||||| ||| ||| |
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| T |
46659023 |
gcaacaaagattattttctagacaggttcattcaactctcatgtttaatgagaaattatccacttcatatgaattacacaaatactgaaaataattattt |
46659122 |
T |
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| Q |
145 |
accaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatcttttgatatgaatt |
212 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||| || || ||||||||||||||| |
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| T |
46659123 |
accaaatgattcaaacac---tagtaatcattggttcaaccaaactagataaacttttgatatgaatt |
46659187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 45245438 - 45245602
Alignment:
| Q |
45 |
gcaacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaattttccacttcaaatgagttatgcaaacactgaaaatgattgttt |
144 |
Q |
| |
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|||||||||||| ||| |||| ||||||||||||| |||| ||| ||| |||||| ||||||||| |||| ||| |||||| ||| ||| ||| ||| |
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| T |
45245438 |
gcaacaaagagtattttttagacaggttcattcaactctcatgtttaatgagaaattatccacttcatatgaattacacaaacattgagaattattattt |
45245537 |
T |
|
| Q |
145 |
accaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatcttttgatatgaatt |
212 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||||||| || || ||||||||||||||| |
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|
| T |
45245538 |
accaaatgattcaaacac---tagtaatcattggttcaaccaaactagataaacttttgatatgaatt |
45245602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 30319956 - 30320120
Alignment:
| Q |
45 |
gcaacaaagagtttttcatagataggttcattcaaccctcagatttgatgggaaattttccacttcaaatgagttatgcaaacactgaaaatgattgttt |
144 |
Q |
| |
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|||||||||||| ||| |||| ||||||||||||| |||| ||| ||| |||||| ||||||||| |||| ||| |||||| ||| ||| ||| ||| |
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| T |
30319956 |
gcaacaaagagtattttttagacaggttcattcaactctcatgtttaatgagaaattatccacttcatatgaattacacaaacattgagaattattattt |
30320055 |
T |
|
| Q |
145 |
accaaatgattcaaacactagtagtaatcattggtttaaccaaactggaaaatcttttgatatgaatt |
212 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| ||||||||| || || ||||||||||||||| |
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| T |
30320056 |
accaaatgattcaaacac---tagtaatcatttgttcaaccaaactagataaacttttgatatgaatt |
30320120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 212
Target Start/End: Original strand, 34051557 - 34051698
Alignment:
| Q |
68 |
aggttcattcaaccctcagatttgatgggaaattttccacttcaaatgagttatgcaaacactgaaaatgattgtttaccaaatgattcaaacactagta |
167 |
Q |
| |
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||||||||||||| |||| ||| ||| |||||| ||||||||| |||| ||| |||| | ||| ||| ||| ||||||||||||||||||||| || |
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| T |
34051557 |
aggttcattcaactctcatgtttaatgagaaattatccacttcatatgaattacacaaatattgataattattatttaccaaatgattcaaacac---ta |
34051653 |
T |
|
| Q |
168 |
gtaatcattggtttaaccaaactggaaaatcttttgatatgaatt |
212 |
Q |
| |
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||||||||||||| ||||||||| || || ||||||||||||||| |
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|
| T |
34051654 |
gtaatcattggttcaaccaaactagataaacttttgatatgaatt |
34051698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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