View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17134_low_134 (Length: 226)

Name: NF17134_low_134
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17134_low_134
NF17134_low_134
[»] chr7 (11 HSPs)
chr7 (1-133)||(6840548-6840680)
chr7 (2-133)||(15614192-15614324)
chr7 (43-180)||(2628227-2628356)
chr7 (94-211)||(6841471-6841580)
chr7 (3-132)||(46963009-46963137)
chr7 (43-132)||(44337385-44337474)
chr7 (3-132)||(46964363-46964491)
chr7 (59-133)||(21814464-21814537)
chr7 (68-133)||(26402359-26402424)
chr7 (68-124)||(26403493-26403549)
chr7 (69-133)||(44339087-44339151)
[»] chr2 (6 HSPs)
chr2 (31-134)||(32291191-32291294)
chr2 (3-132)||(8985612-8985740)
chr2 (58-132)||(8986965-8987039)
chr2 (68-133)||(38583500-38583565)
chr2 (59-127)||(38588198-38588266)
chr2 (98-133)||(32276976-32277011)
[»] chr6 (9 HSPs)
chr6 (4-132)||(22868499-22868628)
chr6 (1-130)||(18792786-18792914)
chr6 (38-133)||(18984534-18984629)
chr6 (1-134)||(33423918-33424052)
chr6 (68-133)||(9290663-9290728)
chr6 (38-131)||(13166474-13166566)
chr6 (53-178)||(10741772-10741888)
chr6 (38-134)||(21862725-21862821)
chr6 (53-178)||(10740574-10740688)
[»] scaffold0511 (1 HSPs)
scaffold0511 (1-130)||(11227-11355)
[»] chr4 (7 HSPs)
chr4 (1-132)||(16543398-16543530)
chr4 (1-133)||(37945521-37945651)
chr4 (1-132)||(16871689-16871819)
chr4 (23-133)||(54146651-54146760)
chr4 (28-121)||(24131825-24131918)
chr4 (75-132)||(16869544-16869601)
chr4 (44-97)||(24226122-24226175)
[»] chr3 (11 HSPs)
chr3 (38-132)||(42531327-42531421)
chr3 (28-132)||(814354-814460)
chr3 (1-133)||(18088076-18088207)
chr3 (1-132)||(30057123-30057255)
chr3 (68-133)||(46691458-46691522)
chr3 (53-134)||(50297496-50297577)
chr3 (70-133)||(50294693-50294756)
chr3 (53-132)||(42530627-42530705)
chr3 (59-133)||(16463004-16463077)
chr3 (53-106)||(29556807-29556859)
chr3 (78-132)||(814298-814351)
[»] chr1 (5 HSPs)
chr1 (34-178)||(15629320-15629458)
chr1 (1-104)||(9168384-9168488)
chr1 (3-132)||(6696053-6696181)
chr1 (38-133)||(15630123-15630220)
chr1 (1-133)||(28665017-28665147)
[»] chr8 (9 HSPs)
chr8 (43-132)||(20241063-20241152)
chr8 (43-132)||(20251915-20252004)
chr8 (1-130)||(44374651-44374780)
chr8 (1-132)||(43414138-43414269)
chr8 (90-132)||(43615496-43615538)
chr8 (69-133)||(20242764-20242828)
chr8 (69-133)||(20250332-20250396)
chr8 (1-118)||(43516178-43516293)
chr8 (68-133)||(16578791-16578856)
[»] chr5 (5 HSPs)
chr5 (5-132)||(11343870-11343997)
chr5 (43-125)||(24137643-24137725)
chr5 (70-134)||(11320486-11320549)
chr5 (59-132)||(17749736-17749809)
chr5 (38-177)||(6643359-6643494)
[»] scaffold0002 (1 HSPs)
scaffold0002 (70-180)||(406256-406358)
[»] scaffold0007 (1 HSPs)
scaffold0007 (96-133)||(14290-14327)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6840548 - 6840680
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataata 100  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6840548 acaaaatagagaaacagagaatataagaacaaagacggttatggtttcataaaatatcaatagctttacattacaaaaggttataaaagaatatataata 6840647  T
Q  101 aaacctaacggactctaacttactaatataaag 133  Q
    |||||||||||||||||||||||| ||||||||    
T  6840648 aaacctaacggactctaacttactgatataaag 6840680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 15614192 - 15614324
Alignment:
Q  2 caaaatagagaaagagagaat-ataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataata 100  Q
    ||||||||||||||||| ||| | ||  | ||||||| ||| ||||||||| |||| |||||| || | |||||||||||||||||||||||||||||||    
T  15614192 caaaatagagaaagagataatcaaaacgataaagacaactagggtttcatagaataacaatagcttaatattacaaaaggttataaaagaatatataata 15614291  T
Q  101 aaacctaacggactctaacttactaatataaag 133  Q
    |||||||| |||||||||||| |||||||||||    
T  15614292 aaacctaatggactctaacttgctaatataaag 15614324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 2628227 - 2628356
Alignment:
Q  43 ggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaagatataaagg 142  Q
    ||||||||| |||||||||||||| |||||||||||  |||| | ||||||||||||||||||||| |||||||||||||||||||||||||            
T  2628227 ggtttcatataatatcaatagtttaacattacaaaaaattatgagagaatatataataaaacctaatggactctaacttactaatataaaga-------- 2628318  T
Q  143 ctcaataacttaaacccgatattttattatctaacaat 180  Q
    ||||||||||||| | | ||| ||||||||||||||||    
T  2628319 ctcaataacttaagctcaatactttattatctaacaat 2628356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 6841471 - 6841580
Alignment:
Q  94 tataataaaacctaacggactctaacttactaatataaagatataaaggctcaataacttaaacccgatattttattatctaacaatgaccaccagtcac 193  Q
    |||||||||| ||||||||||||||||||||        ||||||||||| |||||||||||  ||||||||||||||||||||||||||| |||||| |    
T  6841471 tataataaaatctaacggactctaacttact--------gatataaaggcccaataacttaagtccgatattttattatctaacaatgaccgccagtcgc 6841562  T
Q  194 caccactacctctttctt 211  Q
    ||||| ||||||||||||    
T  6841563 caccattacctctttctt 6841580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 46963009 - 46963137
Alignment:
Q  3 aaaatagagaaagagagaatataagaacaaagacagctatggtttcataa-aatatcaatagttttacattacaaaaggttataaaagaatatataataa 101  Q
    ||||| |||||||||||||||   |||||| ||| |||| | |||||| | |||| |||||| || ||||||||||||||||||| ||||||| ||||||    
T  46963009 aaaatggagaaagagagaatag--gaacaacgacggctacgatttcattataataacaatagcttaacattacaaaaggttataagagaatatctaataa 46963106  T
Q  102 aacctaacggactctaacttactaatataaa 132  Q
    || |||| |||||||||||||||||||||||    
T  46963107 aatctaatggactctaacttactaatataaa 46963137  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 44337474 - 44337385
Alignment:
Q  43 ggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||||||||||||| ||||||  || |||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||    
T  44337474 ggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 44337385  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 132
Target Start/End: Original strand, 46964363 - 46964491
Alignment:
Q  3 aaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaa-tatcaatagttttacattacaaaaggttataaaagaatatataataa 101  Q
    ||||| |||||||||||||||   |||||| ||| |||| | |||||| | | || |||||| || | ||||||||| ||||||| ||||||||||||||    
T  46964363 aaaatggagaaagagagaatag--gaacaacgacggctacgatttcattagactaacaatagcttaatattacaaaaagttataagagaatatataataa 46964460  T
Q  102 aacctaacggactctaacttactaatataaa 132  Q
    || |||| |||||||||| ||||||||||||    
T  46964461 aatctaatggactctaacgtactaatataaa 46964491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 21814537 - 21814464
Alignment:
Q  59 aatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||| || ||||||||||||  ||| | ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  21814537 aatagattaacattacaaaagaatattagagaatatataataaa-cctaatggactctaacttactaatataaag 21814464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 26402424 - 26402359
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||||| |||| |||||||||||||||||||  |||   |||||||||| |||||||||||    
T  26402424 acattacaaaaagttacaaaagaatatataataaaatttaataaactctaacttgctaatataaag 26402359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 26403549 - 26403493
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggactctaacttact 124  Q
    ||||||||||| ||||||| |||||||||||||||| ||||  | ||||||||||||    
T  26403549 acattacaaaaagttataagagaatatataataaaatctaatcggctctaacttact 26403493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 44339151 - 44339087
Alignment:
Q  69 cattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| ||||||||||||||||||    
T  44339151 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaag 44339087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 32291294 - 32291191
Alignment:
Q  31 aaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatata 130  Q
    |||||| |||||||||||||| ||||||||| | ||| |||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||    
T  32291294 aaagacggctatggtttcatagaatatcaattgcttttcattacaaaaggttataagagaatatataataaatcttaatggactctaacttactaatata 32291195  T
Q  131 aaga 134  Q
    ||||    
T  32291194 aaga 32291191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 8985740 - 8985612
Alignment:
Q  3 aaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaa-tatcaatagttttacattacaaaaggttataaaagaatatataataa 101  Q
    ||||| |||||||||||||||   |||||| ||| |||| | |||||| | | || |||||| || ||||||||||||||||||| ||||||||||||||    
T  8985740 aaaatggagaaagagagaatag--gaacaacgacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatataataa 8985643  T
Q  102 aacctaacggactctaacttactaatataaa 132  Q
    || |||| ||||| |||||||||||||||||    
T  8985642 aatctaatggactttaacttactaatataaa 8985612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 8987039 - 8986965
Alignment:
Q  58 caatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||||| || ||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||    
T  8987039 caatagcttaacattacaaaaggttataagagaatatataataaaatttaatggactctaacttactaatataaa 8986965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 38583500 - 38583565
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||||||||||||||||||  ||||||||||||||| |||||||  ||||||||||||||||||||    
T  38583500 acattacaaaaggttataagcgaatatataataaaatctaacgggttctaacttactaatataaag 38583565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 38588198 - 38588266
Alignment:
Q  59 aatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaat 127  Q
    ||||| || ||||||||||||||||||| | ||||||||||||||||||||  ||||||||||| ||||    
T  38588198 aatagattgacattacaaaaggttataagaaaatatataataaaacctaacctactctaacttattaat 38588266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 133
Target Start/End: Complemental strand, 32277011 - 32276976
Alignment:
Q  98 ataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32277011 ataaaacctaatggactctaacttactaatataaag 32276976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 22868628 - 22868499
Alignment:
Q  4 aaatagagaaagagagaatat-aagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaa 102  Q
    ||||||||| ||| ||||||  || ||||||||  |||| ||||||||| |||||||||||  | ||||||||||| ||||||| |||||||||||||||    
T  22868628 aaatagagagagaaagaataggaacaacaaagatggctagggtttcatagaatatcaatagcataacattacaaaaagttataagagaatatataataaa 22868529  T
Q  103 acctaacggactctaacttactaatataaa 132  Q
    |||||| |||||||||||||||||||||||    
T  22868528 acctaatggactctaacttactaatataaa 22868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 18792786 - 18792914
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataata 100  Q
    ||||||||||||||||||  | | || |||||| || ||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  18792786 acaaaatagagaaagagaataaa-aacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatatacaata 18792884  T
Q  101 aaacctaacggactctaacttactaatata 130  Q
    |||| ||| | ||| |||||||||||||||    
T  18792885 aaacttaatgcactttaacttactaatata 18792914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 18984629 - 18984534
Alignment:
Q  38 gctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||| |||||||||||||| ||||||  || |||||| ||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||    
T  18984629 gctagggtttcataaaataacaatagcattgcattactaaaggttataagagaatatataataaaacataatgtactctaacttactaatataaag 18984534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 33423918 - 33424052
Alignment:
Q  1 acaaaatagagaaagagagaat-ataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||||||||||  |||| || |||||| |||| |||||| || |||| |||||| |  |||||||||| ||||||   ||||||||||||    
T  33423918 acaaaatagagaaagagagaacgataacaataaagacggctagggtttcgtagaataacaatagctcaacattacaaagggttatgggagaatatataat 33424017  T
Q  100 aaaacctaacggactctaacttactaatataaaga 134  Q
    ||||||||| | ||| |||||||||||||||||||    
T  33424018 aaaacctaatgaactttaacttactaatataaaga 33424052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 9290663 - 9290728
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||    
T  9290663 acattacaaaaggttataagagaatatataataaaacctaatggactctaacttattaatataaag 9290728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 13166566 - 13166474
Alignment:
Q  38 gctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataa 131  Q
    |||| ||||||||||||||||||| | || |||||| |||||||||| | |||||||||||||| || ||| | ||||||||||  ||||||||    
T  13166566 gctagggtttcataaaatatcaatggcttaacatta-aaaaggttatgagagaatatataataacacttaatgaactctaacttgttaatataa 13166474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 10741888 - 10741772
Alignment:
Q  53 aatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaagatataaaggctcaataact 152  Q
    ||||||||| | || | ||||||||| ||||| | ||||||||||||||| | ||| |||||||||||| ||||||||||||        | ||||||||    
T  10741888 aatatcaattgcttaatattacaaaatgttatgagagaatatataataaatc-taatggactctaactttctaatataaaga--------cccaataact 10741798  T
Q  153 taaacccgatattttattatctaaca 178  Q
    ||| ||| ||||||||||||||||||    
T  10741797 taagcccaatattttattatctaaca 10741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 21862821 - 21862725
Alignment:
Q  38 gctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaaga 134  Q
    |||| ||||||||| |||| |||| | || | ||||||||  ||||  | ||||||||||||||||||||| | |||||||||| ||||||||||||    
T  21862821 gctagggtttcatagaataacaattgcttaatattacaaagagttactagagaatatataataaaacctaatgcactctaacttgctaatataaaga 21862725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 178
Target Start/End: Complemental strand, 10740688 - 10740574
Alignment:
Q  53 aatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaagatataaaggctcaataact 152  Q
    ||||||||||  || | ||||||||| ||||| | |||||||||||| |||| ||| ||||||||| || ||||||||||||          ||||||||    
T  10740688 aatatcaataacttaatattacaaaatgttatgagagaatatataat-aaacgtaatggactctaatttgctaatataaaga----------caataact 10740600  T
Q  153 taaacccgatattttattatctaaca 178  Q
    ||| ||| ||||||||||||||||||    
T  10740599 taagcccaatattttattatctaaca 10740574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 11355 - 11227
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataata 100  Q
    ||||||||||||||||||  | | || |||||| || ||||  ||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  11355 acaaaatagagaaagagaataaa-aacaacaaatacggctagagtttcataaaatatcaatagtttaacattacaaaaggttataagagaatatacaata 11257  T
Q  101 aaacctaacggactctaacttactaatata 130  Q
    |||| ||| | ||| |||||||||||||||    
T  11256 aaacttaatgcactttaacttactaatata 11227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16543530 - 16543398
Alignment:
Q  1 acaaaatagagaaagagagaatat-aagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    ||||| |||||||||||| ||||| || ||||||||| |||| ||||||||| ||||||||||  || ||||| |||||||||| |  ||||||||||||    
T  16543530 acaaattagagaaagagacaatatgaacaacaaagacggctagggtttcatagaatatcaataccttaacattgcaaaaggttacatgagaatatataat 16543431  T
Q  100 aaaacctaacggactctaacttactaatataaa 132  Q
    ||||| ||| | |||||||||||||||||||||    
T  16543430 aaaacttaatgaactctaacttactaatataaa 16543398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 37945651 - 37945521
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcat-aaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||| |||||||||||  | ||||||   ||||||||  ||||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||    
T  37945651 acaaaataaagaaagagagataacaagaac---gacagctagagtttcattaaaatatcaattgattaacattacaaaaggttataagagaatatataat 37945555  T
Q  100 aaaacctaacggactctaacttactaatataaag 133  Q
    ||||  ||| ||||||||||||||||||||||||    
T  37945554 aaaatttaatggactctaacttactaatataaag 37945521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16871819 - 16871689
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaa-tatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    ||||||| ||||||||||||| |  ||||||| ||| |||| |||||||| | | || |||||| || ||||||||||||||||||| | ||||||||||    
T  16871819 acaaaatggagaaagagagaaca--agaacaacgacggctagggtttcattagactaacaatagcttaacattacaaaaggttataagataatatataat 16871722  T
Q  100 aaaacctaacggactctaacttactaatataaa 132  Q
    |||| |||| |||||||||||||||||||||||    
T  16871721 aaaatctaatggactctaacttactaatataaa 16871689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 54146760 - 54146651
Alignment:
Q  23 ataagaacaaagacagctatggtttcat-aaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaactt 121  Q
    |||| ||||||||| |||| |||||||| ||||||||||||| || | ||||||||| ||||| | ||||||||| ||||| | ||| ||||||||||||    
T  54146760 ataacaacaaagacggcta-ggtttcattaaaatatcaatagcttaatattacaaaatgttatgagagaatatatgataaatc-taatggactctaactt 54146663  T
Q  122 actaatataaag 133  Q
    ||||||||||||    
T  54146662 actaatataaag 54146651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 24131918 - 24131825
Alignment:
Q  28 aacaaagacagctatggtttcat-aaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaactt 121  Q
    |||||||||  ||| |||||||| ||||||| |||  ||| ||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||    
T  24131918 aacaaagacgactagggtttcattaaaatat-aatgatttaacattacaaaatgttataagagaacatataataaaacctaatggactctaactt 24131825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 16869601 - 16869544
Alignment:
Q  75 aaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||| ||||||| ||| |||||||||||| |||| | |||||||||||||||||||||    
T  16869601 aaaaagttataagagagtatataataaaatctaatgaactctaacttactaatataaa 16869544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 24226175 - 24226122
Alignment:
Q  44 gtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatata 97  Q
    |||| ||| |||| ||||||||| ||||||||||||||||| | ||||||||||    
T  24226175 gttttatagaataccaatagtttaacattacaaaaggttattagagaatatata 24226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 42531421 - 42531327
Alignment:
Q  38 gctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||| ||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||    
T  42531421 gctagggtttcatacaatatcaatggcttaacattacaaaaggttataagagaatatataataaaacctaatgaactttaacttactaatataaa 42531327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 814354 - 814460
Alignment:
Q  28 aacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaaga--atatataataaaacctaacggactctaacttacta 125  Q
    ||||||||||||||  |||||||| |||| |||||| || ||||||||| ||||||||| |||  ||||||||  |||||||| ||||||||||||||||    
T  814354 aacaaagacagctagagtttcatagaataccaatagcttaacattacaagaggttataagagaatatatataacgaaacctaatggactctaacttacta 814453  T
Q  126 atataaa 132  Q
    |||||||    
T  814454 atataaa 814460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 18088076 - 18088207
Alignment:
Q  1 acaaaatagagaaagagagaatata-agaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||||||||||||   | |||||| || |||| ||||||||| ||| ||||||| ||   ||||||||| ||||| | ||||||||||||    
T  18088076 acaaaatagagaaagagagaatagggaaaacaaa-acggctagggtttcatagaatgtcaatagcttgctattacaaaatgttatgagagaatatataat 18088174  T
Q  100 aaaacctaacggactctaacttactaatataaag 133  Q
    ||| ||||| ||||||||||||||||||||||||    
T  18088175 aaa-cctaatggactctaacttactaatataaag 18088207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 30057255 - 30057123
Alignment:
Q  1 acaaaatagagaaagagagaatat-aagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||  ||||||||| || |||||||||  ||| | ||||| | || |||||||| || |||||||||||| |||||| |||||||||||     
T  30057255 acaaaatagagaacaagagaatatgaacaacaaagacgactaggatttcagagaacatcaatagcttaacattacaaaagattataagagaatatataac 30057156  T
Q  100 aaaacctaacggactctaacttactaatataaa 132  Q
    |||| |||| |||||||||||||  ||||||||    
T  30057155 aaaatctaatggactctaacttatgaatataaa 30057123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 46691458 - 46691522
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||    
T  46691458 acattacaaaaggttataagagaatatataataaaa-ctaatggactctaacttactagtataaag 46691522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 50297577 - 50297496
Alignment:
Q  53 aatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaaga 134  Q
    ||||| ||| |||| |||||||||||||||||||  ||| |||||||||||| ||| | |||||||||||||||||||||||    
T  50297577 aatattaattgtttaacattacaaaaggttataagtgaacatataataaaacataatgaactctaacttactaatataaaga 50297496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 50294756 - 50294693
Alignment:
Q  70 attacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||| ||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||    
T  50294756 attacaaaatgttataagataatatataataaaacctaatggactctaacttattaatataaag 50294693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 42530705 - 42530627
Alignment:
Q  53 aatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    ||||||||| | || |||||||||| |||||||| ||||||||||||||||||||| | ||| ||| |||||||||||||    
T  42530705 aatatcaatggcttaacattacaaa-ggttataagagaatatataataaaacctaatgaactttaatttactaatataaa 42530627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 16463077 - 16463004
Alignment:
Q  59 aatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    ||||| || ||||||||||||  ||| | ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  16463077 aatagattaacattacaaaagaatattagagaatatataataaa-cctaatggactctaacttactaatataaag 16463004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 29556859 - 29556807
Alignment:
Q  53 aatatcaatagttttacattacaaaaggttataaaagaatatataataaaacct 106  Q
    ||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||    
T  29556859 aatatcattagtttaacattacaaaagggtataaaagaatata-aataaaacct 29556807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 814351 - 814298
Alignment:
Q  78 aggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    ||||||||| |||||||| ||  |||||||| |||||||||||||||||||||||    
T  814351 aggttataagagaatata-aacgaaacctaatggactctaacttactaatataaa 814298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 15629320 - 15629458
Alignment:
Q  34 gacagctatggtttcataaaatat--caatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataa 131  Q
    |||| ||| |||||||||||||||  |||||| || | ||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  15629320 gacaactagggtttcataaaatatttcaatagcttaatattacaaaaggttataagagaatatataataaaatctaatgaactctaacttactaatataa 15629419  T
Q  132 agatataaaggctcaataacttaaacccgatattttattatctaaca 178  Q
    || |         ||||||||||| ||| ||||||||||||||||||    
T  15629420 aggtc--------caataacttaagcccaatattttattatctaaca 15629458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9168384 - 9168488
Alignment:
Q  1 acaaaatagagaaagagagaatataag-aacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||||||||||||| |  ||||||||| |||| ||||||||||||||||||||  || | || |||||| ||||||| ||||||||||||    
T  9168384 acaaaatagagaaagagagaatatgaccaacaaagacggctagggtttcataaaatatcaataacttgatatcacaaaatgttataagagaatatataat 9168483  T
Q  100 aaaac 104  Q
    |||||    
T  9168484 aaaac 9168488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 6696181 - 6696053
Alignment:
Q  3 aaaatagagaaagagagaatataagaacaaagacagctatggtttcataaaa-tatcaatagttttacattacaaaaggttataaaagaatatataataa 101  Q
    ||||| |||||||||||||||   |||||| ||| |||| | |||||| | | || |||||| || ||||||||||||||||||| ||||||| ||||||    
T  6696181 aaaatggagaaagagagaatag--gaacaacgacggctacgatttcattagactaacaatagcttaacattacaaaaggttataagagaatatttaataa 6696084  T
Q  102 aacctaacggactctaacttactaatataaa 132  Q
    || |||| |||||||||||||||||||||||    
T  6696083 aatctaatggactctaacttactaatataaa 6696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 15630123 - 15630220
Alignment:
Q  38 gctatggtttcataaaatat--caatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||| |||||||||||||||  |||||  || | ||| ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  15630123 gctagggtttcataaaatatttcaataacttaatattccaaaaggttataagagaatatataataaaacctaatagactctaacttactaatataaag 15630220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 28665147 - 28665017
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttcataa-aatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    ||||||| |||||||||||||||   |||||| ||| |||| |||||||| | |||| |||||| || | ||||||||| ||||| | ||||||||||||    
T  28665147 acaaaatggagaaagagagaatag--gaacaacgacggctagggtttcattagaataacaatagcttaatattacaaaatgttatgagagaatatataat 28665050  T
Q  100 aaaacctaacggactctaacttactaatataaag 133  Q
    ||| ||||| ||||||||||||||||||||||||    
T  28665049 aaa-cctaatggactctaacttactaatataaag 28665017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 20241152 - 20241063
Alignment:
Q  43 ggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||||||||||||| ||||||  || |||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||    
T  20241152 ggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20241063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 20251915 - 20252004
Alignment:
Q  43 ggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||||||||||||| ||||||  || |||||| ||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||||    
T  20251915 ggtttcataaaataacaatagcattgcattactaaatgttataagagaatatataataaaatctaacggactctaacttactactataaa 20252004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 44374780 - 44374651
Alignment:
Q  1 acaaaatagagaaagagagaatat-aagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||||||| ||||| || ||||||||| ||||   |||||||  |||||||||| |  |||||| ||||| |||||||||||||||||||    
T  44374780 acaaaatagagaaagagataatatgaacaacaaagacggctaaa-tttcatagcatatcaatagctaaacattaaaaaagattataaaagaatatataat 44374682  T
Q  100 aaaacctaacggactctaacttactaatata 130  Q
    ||||| |||  |||||||||| |||||||||    
T  44374681 aaaacataatagactctaactcactaatata 44374651  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 43414269 - 43414138
Alignment:
Q  1 acaaaatagagaaagagagaat-ataagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||| ||||||||||||||  |||| || |||||| | ||  |||| |||||| | ||||||||  | ||||||||||||||| | ||||||||||||    
T  43414269 acaaaacagagaaagagagaacgataacaataaagacggttagagttttataaaagaacaatagttgaatattacaaaaggttatgagagaatatataat 43414170  T
Q  100 aaaacctaacggactctaacttactaatataaa 132  Q
     |||  || |||||||||||||| |||||||||    
T  43414169 -aaatttagcggactctaacttattaatataaa 43414138  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 43615538 - 43615496
Alignment:
Q  90 aatatataataaaacctaacggactctaacttactaatataaa 132  Q
    |||||||||||||| |||| |||||||||||||||||||||||    
T  43615538 aatatataataaaatctaatggactctaacttactaatataaa 43615496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 20242828 - 20242764
Alignment:
Q  69 cattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| ||||||||||||||||||    
T  20242828 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaag 20242764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 133
Target Start/End: Original strand, 20250332 - 20250396
Alignment:
Q  69 cattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaag 133  Q
    |||||| ||| ||||||| ||||||||||||||||  |||  |||| ||||||||||||||||||    
T  20250332 cattactaaatgttataacagaatatataataaaatttaaaagactttaacttactaatataaag 20250396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43516293 - 43516178
Alignment:
Q  1 acaaaatagagaaagagagaatataagaacaaagacagctatggtttc-ataaaatatcaatagttttacattacaaaaggttataaaagaatatataat 99  Q
    |||||||||||||| |||||  ||| |||||| ||| |||| |||||| ||| |||| || ||| || |||||||| |||||||  | ||||||||| ||    
T  43516293 acaaaatagagaaacagaga--ataggaacaatgacggctagggtttcaatagaataccattagcttaacattacataaggttactagagaatatat-at 43516197  T
Q  100 aaaacctaacggactctaa 118  Q
    ||||||||| |||||||||    
T  43516196 aaaacctaatggactctaa 43516178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 16578791 - 16578856
Alignment:
Q  68 acattacaaaaggttataaaagaatatataataaaacctaacggact-ctaacttactaatataaag 133  Q
    |||||||||||||||| || ||||||||| |||||| |||| ||||| |||||||| ||||||||||    
T  16578791 acattacaaaaggttacaatagaatatat-ataaaatctaatggactgctaacttagtaatataaag 16578856  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 11343870 - 11343997
Alignment:
Q  5 aatagagaaagagagaatat-aagaacaaagacagctatggtttcataaaatatcaatagttttacattacaaaag-gttataaaagaatatataataaa 102  Q
    ||||||||||||||||| || || ||||||||| |||| |||||||||||| |||||||| || |||||||||||  ||||||| ||| |||||||||||    
T  11343870 aatagagaaagagagaacatgaataacaaagacggctaaggtttcataaaa-atcaatagcttaacattacaaaaatgttataagagagtatataataaa 11343968  T
Q  103 acctaacggactctaacttactaatataaa 132  Q
    || ||| | |||||||||||||||||||||    
T  11343969 acttaatg-actctaacttactaatataaa 11343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 24137725 - 24137643
Alignment:
Q  43 ggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttacta 125  Q
    ||||||||| ||||||||| | || |||||||| |||||||||| |||||||||||||||||||||  |||||||||||||||    
T  24137725 ggtttcatataatatcaattgcttaacattacagaaggttataagagaatatataataaaacctaatagactctaacttacta 24137643  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 11320486 - 11320549
Alignment:
Q  70 attacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaaga 134  Q
    ||||||||||||||||| ||||||||||||||||  ||| |||||| ||||||||||||||||||    
T  11320486 attacaaaaggttataagagaatatataataaaa-ttaatggactccaacttactaatataaaga 11320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 17749809 - 17749736
Alignment:
Q  59 aatagttttacattacaaaaggttataaaagaatatataataaaacctaacggact-ctaacttactaatataaa 132  Q
    |||||||| ||||||||||| |||| ||||||||||| |||||||| ||||||||| |||||||| |||||||||    
T  17749809 aatagtttgacattacaaaaagttacaaaagaatata-aataaaacgtaacggactgctaacttagtaatataaa 17749736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 177
Target Start/End: Complemental strand, 6643494 - 6643359
Alignment:
Q  38 gctatggtttcataaaatatcaatagttttacattacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaagatat 137  Q
    |||| ||||||||| |||| || ||| || |||||  |||||||||||  ||||||||||||||||  |||  ||||||| ||||||||||||   ||||    
T  6643494 gctagggtttcatagaataaca-tagcttaacattgtaaaaggttatatgagaatatataataaaatttaattgactctatcttactaatata---atat 6643399  T
Q  138 aaaggctcaataacttaaacccgatattttattatctaac 177  Q
    || | | ||||||||||| ||| ||| |||||||||||||    
T  6643398 aatgacccaataacttaagcccaatactttattatctaac 6643359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 406256 - 406358
Alignment:
Q  70 attacaaaaggttataaaagaatatataataaaacctaacggactctaacttactaatataaagatataaaggctcaataacttaaacccgatattttat 169  Q
    |||| |||||||||||| ||||||||||||||||| ||| |||||||||||| |||        |||||||||| ||||||||||||||  ||| |||||    
T  406256 attagaaaaggttataatagaatatataataaaacttaaaggactctaacttgcta--------atataaaggcccaataacttaaacctaatactttat 406347  T
Q  170 tatctaacaat 180  Q
    |||||||||||    
T  406348 tatctaacaat 406358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 14290 - 14327
Alignment:
Q  96 taataaaacctaacggactctaacttactaatataaag 133  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  14290 taataaaacataacgtactctaacttactaatataaag 14327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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