View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_136 (Length: 225)
Name: NF17134_low_136
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_136 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 15658275 - 15658059
Alignment:
| Q |
1 |
acatgttcttatgtgctatctcccctgcactttttctttttcccctcccaccactaataatctcaagatcagcatcagcagcaccgtctttgtcaccatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15658275 |
acatgttcttatgtgctatctcccctgcactttttctttttcccctcccaccactaataatctcaagatcagcatcagcagcaccgtctttgtcaccatc |
15658176 |
T |
|
| Q |
101 |
agcatcgacaactatcacattagctttttctagcagcttcttttgtaacttattaacattatcttgcataagtttcttaacatccagaggaactgacgga |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15658175 |
agcatcgacaactatcaaattagctttttctagcagcttcttttgtaacttattaaccttatcttgcataagtttcttaacatccagaggaaccgacgga |
15658076 |
T |
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| Q |
201 |
caaaccacaacatctct |
217 |
Q |
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|||||| |||||||||| |
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| T |
15658075 |
caaaccgcaacatctct |
15658059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 244204 - 243998
Alignment:
| Q |
1 |
acatgttcttatgtgctatctcccctgcactttttctttttcccctcccaccactaataatctcaagatcagcatcagcagcaccgtctttgtcaccat- |
99 |
Q |
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||||||||||| |||||||||| | | ||||||||||||||||||| || ||| || ||||||||||||||||||||||||||| |||||||| |||| |
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| T |
244204 |
acatgttcttaggtgctatctcgcttacactttttctttttcccctgcctccatcaacaatctcaagatcagcatcagcagcaccatctttgtccccatc |
244105 |
T |
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| Q |
100 |
--cagcatcgacaactatcacattagctttttctagc-agcttcttttgtaacttattaacattatcttgcataagtttcttaacatccagaggaactga |
196 |
Q |
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||||||||||||||| || ||||||||||| |||| | ||||||||||||||||| ||| |||| ||||||| ||||||||||||| ||||||| || |
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| T |
244104 |
agcagcatcgacaactaacaaattagctttttttagcaaacttcttttgtaacttatcaaccctatcctgcataactttcttaacatccggaggaaccga |
244005 |
T |
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| Q |
197 |
cggacaa |
203 |
Q |
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||||||| |
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| T |
244004 |
cggacaa |
243998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 246359 - 246458
Alignment:
| Q |
100 |
cagcatcgacaactatcacattagctttttctagcagcttcttttgtaacttattaacattatcttgcataagtttcttaacatccagaggaactgacgg |
199 |
Q |
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||||||||||||||| || ||||||||||| ||||| ||||||| ||||||||| ||| |||| | ||||| ||||||||||||| ||||||| ||||| |
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| T |
246359 |
cagcatcgacaactaacaaattagctttttttagcaacttctttggtaacttatcaaccctatcctacataattttcttaacatccggaggaaccgacgg |
246458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 246287 - 246360
Alignment:
| Q |
1 |
acatgttcttatgtgctatctcccctgcactttttctttttcccctcccaccactaataatctcaagatcagca |
74 |
Q |
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||||||||||| |||||||||||| | || ||||||||||||||||||| ||| || ||||| |||||||||| |
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| T |
246287 |
acatgttcttaggtgctatctcccttacaatttttctttttcccctcccgccatcaacaatctgaagatcagca |
246360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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