View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_14 (Length: 577)
Name: NF17134_low_14
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Original strand, 13610508 - 13611088
Alignment:
| Q |
9 |
gagagagatgaagcaggaacaagaggaaaagaagcagctttatgcagtttttgtgagtattattatacaagaaagaaattaatctaccaatgtnnnnnnn |
108 |
Q |
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| T |
13610508 |
gagagagaagaagcaggaacaagaggaaaagaagcagctttatgcagtttttgtgagtattattatacaagaaagaaattaatctaccaatgtaaaaaaa |
13610607 |
T |
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| Q |
109 |
tgacagcaaatgaagaagattaatggtcctttcatatatgtacaaatatttggtaagaaatannnnnnnnnaaaacaaaaaattaaattgtattaataat |
208 |
Q |
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| T |
13610608 |
tgacagcaaatgaagaagattaatggtcctttcatatatgtacaaatatttggtaagaaatatttttttttaaaacaaaaaattaaattgtattaataat |
13610707 |
T |
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| Q |
209 |
aatatgacagctttttcattagcatgttatctgtgcgaagtttttatcgtcgtttagcaacgacta------atcgaggaacttgtgacgtatacaatat |
302 |
Q |
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| T |
13610708 |
aatatgacagctttttcattagcatgttatctgtgcgaagtttttatcgtcgtttagcaacgactacgactaatcgaggaacttgtgacgtacacaatat |
13610807 |
T |
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| Q |
303 |
tttatacgcgtaatttcagacactaatattttgaaccgagtaggatttgtac------gagtgacaaaatcctcacttaaaatatttaacattgatgcat |
396 |
Q |
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| T |
13610808 |
tttatacgcgtaatttcagacactaatattttgaaccgagtaggacttgtacgagtacgagtgacaaaatcctcactcaaaatatttaacattgatgcat |
13610907 |
T |
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| Q |
397 |
taataatattggatttgaactcaagacttttttattaagtcgaacaataccaattattatctcgatctcatgcatagttaataatagtagtaaataaaat |
496 |
Q |
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| T |
13610908 |
taataatgttggattcgaactcaagacttttttattaagtctaaaaataccaattattatctcgatctcatgcatagttaataataccagtaaataaaat |
13611007 |
T |
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| Q |
497 |
attttttaaatgagtaaatagaatactctacttaaggaagaagaaaaagacaagaagagaataaaattgaataaattaatt |
577 |
Q |
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| T |
13611008 |
attttttaaatgaggaaatagaatactctacttaaggaagaagaaaaagacaagaaaagaataaaattgaataaattaatt |
13611088 |
T |
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