View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_15 (Length: 573)
Name: NF17134_low_15
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 16 - 351
Target Start/End: Original strand, 4716708 - 4717044
Alignment:
| Q |
16 |
atacacatgattttacagctaagtaaaaattcttttggcagaaagcttaaagtatgagtcagaaaagaagatgaactagtcaatgcttttttcatcc-aa |
114 |
Q |
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| T |
4716708 |
atacacatgattttacagctaagtaaaaattcttttggcagaaagcataaagtatgagtcagaaaagaagatgaactagtcaatgcttttttcatcctaa |
4716807 |
T |
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| Q |
115 |
taatgtactaatccgtacatgctaatctcatcatgtagcatcttaatcttctcaatatagtgtgaactcaaagacttcttttcaaccaccttctccattc |
214 |
Q |
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| T |
4716808 |
taatgtactaatccgtacatgctaatctcatcatgtagcatcttaatcttctcaatatagtgtgaactcaaagacttcttttcaaccaccttttccattc |
4716907 |
T |
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| Q |
215 |
taatgtcatttgataacgaccctttttattttcacattgaaatttcataacacacacccttttctttaatttttcaactatcacattatcattgaccatt |
314 |
Q |
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| T |
4716908 |
taatgtcatttgataatgaccctttttattttcacattgaaatttcataacacacacccttttctttaatttttcaactatcacattatcattgaccatt |
4717007 |
T |
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| Q |
315 |
gtcacacacacactcactcccacattgcaagttctaa |
351 |
Q |
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| T |
4717008 |
gtcacacacacactcactcccacattgcaagttctaa |
4717044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 430 - 555
Target Start/End: Original strand, 4717123 - 4717248
Alignment:
| Q |
430 |
atcacacccctttaaaattttcaatcatcacattatcattgtcattgtcattaactattgtcacaccctcatagcaagttctaaaacttttcttagtgaa |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4717123 |
atcacacccctttaaaattttcaatcatcacattatcattgtcattgtcattaaatattgtcacaccctcatagcaagttctaaaacttttcttagtgaa |
4717222 |
T |
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| Q |
530 |
agtttcaatttttcttctcacattga |
555 |
Q |
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| T |
4717223 |
agtttcaatttttcttctcacattga |
4717248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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