View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_16 (Length: 571)
Name: NF17134_low_16
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 47060330 - 47059964
Alignment:
| Q |
18 |
gatcaaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatc |
117 |
Q |
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| T |
47060330 |
gatcaaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatc |
47060231 |
T |
|
| Q |
118 |
atctctcaagtctttattcatagctgaatctctcttcccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggagatctgctgg |
217 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47060230 |
atctctcaagtctttattcatagctgaatctctgtttccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggaga-ctgctgg |
47060132 |
T |
|
| Q |
218 |
agcatcacggttagcagtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccattacatttggggtaaaaccca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47060131 |
agcatcacggttagcagtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccattacctttggggtaaaaccca |
47060032 |
T |
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| Q |
318 |
aaagcaaaatggccagaacgtgatggccatgaagtattttcgcctttaggatagagcaaagaacccaa |
385 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||| ||||| ||||| |
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| T |
47060031 |
aaagcaaaatggccagaacttgattgccatgaagtattttcacctttaggagcgaggaaagaccccaa |
47059964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 385
Target Start/End: Original strand, 47081472 - 47081838
Alignment:
| Q |
18 |
gatcaaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47081472 |
gatcaaagctttgccatataactgtagaattctcatcataaagcacaaagttgccagaatcatgcatagatgccttagagaccaaattctcctctgaatc |
47081571 |
T |
|
| Q |
118 |
atctctcaagtctttattcatagctgaatctctcttcccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggagatctgctgg |
217 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47081572 |
atctctcaagtctttattcatagctgaatctctgtttccattttgaagaagcagaccttgctctgtcaaattcaacatagatttagaggaga-ctgctgg |
47081670 |
T |
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| Q |
218 |
agcatcacggttagcagtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccattacatttggggtaaaaccca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47081671 |
agcatcacggttagcagtccacacaacagtggttgtgttttcagatggattaaccaaccatattccaacagcaaaaccattacctttggggtaaaaccca |
47081770 |
T |
|
| Q |
318 |
aaagcaaaatggccagaacgtgatggccatgaagtattttcgcctttaggatagagcaaagaacccaa |
385 |
Q |
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||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||| ||||| ||||| |
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| T |
47081771 |
aaagcaaaatggccagaacttgattgccatgaagtattttcacctttaggagcgaggaaagaccccaa |
47081838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 337 - 557
Target Start/End: Original strand, 47082641 - 47082855
Alignment:
| Q |
337 |
gtgatggccatgaagtattttcgcctttaggatagagcaaagaacccaacccaatgattctggggtgtttttcagttgttgcttctggagtaggcttccc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47082641 |
gtgatggccatgaagtattttcgcctttaggatagagcaaagaacccaacccaatgattctggggtgtttttcagttgttgcttctggagtaggcttccc |
47082740 |
T |
|
| Q |
437 |
agtagtagtacccgtttgtgatacgtcaaagtcaaagcacgaacaagtaaatagcatgaagaaaaagaacagtaacaacaggacagggttgtaagccata |
536 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47082741 |
agtagtagtacgcgtttgtgatac------gtcaaagcacgaacaagtaaatagcatgaagaaaaagaacagtaacaacaggacagggttgtaagccata |
47082834 |
T |
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| Q |
537 |
gaattggtaactatttctctg |
557 |
Q |
| |
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||||||||||||||||||||| |
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| T |
47082835 |
gaattggtaactatttctctg |
47082855 |
T |
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