View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_17 (Length: 569)
Name: NF17134_low_17
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 33495732 - 33496282
Alignment:
| Q |
18 |
ctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaacaatccatgg |
117 |
Q |
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| T |
33495732 |
ctgtgcgtaaagtcaaacaacaatgtagtaaagttgttagcaagagggagaagctcacttaacacatcatataagccaatattcttccaacaatccatgg |
33495831 |
T |
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| Q |
118 |
cttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcattaagattgac |
217 |
Q |
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| T |
33495832 |
cttttgcacaaacaaagaagagattaatgtgggattccgcaaaagtttcacacataacgcatgattcctcgcactgaattcctcttacattaagattgac |
33495931 |
T |
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| Q |
218 |
atgggcgggcaagcaatgatgagctaaatgccatataaaggctcgaacacggtgaggaatatcaagattctagatattcatccaaagagaattatcgtgg |
317 |
Q |
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| T |
33495932 |
acgggtgggcaagaaatgatgagctaaatgccacataaaggctcgaacacggtgaggaatatcgagagtccagatattcatccaaagagaattattgtgg |
33496031 |
T |
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| Q |
318 |
gcagaatcatgagggtggagtagatcaatacaaataagggtgttgttatttccatattctggtgtcaaacaacagacggttatggagagggatggagagt |
417 |
Q |
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| T |
33496032 |
gcagaatcatgagggtggagtagatcaatacaaataagggtgttgttatttccatattctggtgtcaaacaacagacggttatggagagggatggagagt |
33496131 |
T |
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| Q |
418 |
atagcagcatcgtcttggggattgaaaatggatgtaactatctattggttccaagaaaggccttccgtattcaacaagtaattcactgtaagatcttcat |
517 |
Q |
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| T |
33496132 |
atagcagcatcgtcttggggattgaaaatggatgtaactatctattggttccaagagaggccttccg-attcagcaagtaattcactgtaagatcttcat |
33496230 |
T |
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| Q |
518 |
gaagagacgacataggagttgaaggtttgtgagaagaaagattacgtattca |
569 |
Q |
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| T |
33496231 |
gaagagacggcataggagttgaaggtttgtgagaagaaagattacgtattca |
33496282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 4243853 - 4243510
Alignment:
| Q |
9 |
gagcagaacctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
108 |
Q |
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| T |
4243853 |
gagcataatctgtgcataaagtcaaacaacaatgtagtaaagttgttagcaagaggcagcagctcacttaacacaacatgtaagccaatattcttccaac |
4243754 |
T |
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| Q |
109 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcacacataacacatgattcctcgcactgaattcctcttgcatt |
208 |
Q |
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| T |
4243753 |
aatccatggcttttgcgcaaacaaagaagagatgagtgtggcattccgcaaaattttcaaacataacacatgattcctcgcactggattcctcttgcatt |
4243654 |
T |
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| Q |
209 |
aagattgacatgggcgggcaagcaatgatgagctaaatgccatataaaggctcgaacacggtgaggaatatcaagattctagatattcatccaaagagaa |
308 |
Q |
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| T |
4243653 |
aagattgacacgagtgggcaagcaattatgagctaaacgccatagaaaggctcggacacggtgaggaatattgagattccagatattcatccatgaagaa |
4243554 |
T |
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| Q |
309 |
ttatcgtgggcagaatcatgagggtggagtagatcaatacaaat |
352 |
Q |
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| T |
4243553 |
ttattgtgggcagaatcatgagggtggagtagatcactacaaat |
4243510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 366 - 566
Target Start/End: Complemental strand, 4243467 - 4243267
Alignment:
| Q |
366 |
tttccatattctggtgtcaaacaacagacggttatggagagggatggagagtatagcagcatcgtcttggggattgaaaatggatgtaactatctattgg |
465 |
Q |
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||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |
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| T |
4243467 |
tttccatattctggtgtcagacaacagacggttatgtagagggatggagagtatagcagcagcgtcttggggattgaaaatggatgtaactatttgttgg |
4243368 |
T |
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| Q |
466 |
ttccaagaaaggccttccgtattcaacaagtaattcactgtaagatcttcatgaagagacgacataggagttgaaggtttgtgagaagaaagattacgta |
565 |
Q |
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| T |
4243367 |
ttccaagagaggccttccagattcaacaagtaattcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgta |
4243268 |
T |
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| Q |
566 |
t |
566 |
Q |
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| T |
4243267 |
t |
4243267 |
T |
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