View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_18 (Length: 555)
Name: NF17134_low_18
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 18 - 548
Target Start/End: Complemental strand, 2787772 - 2787242
Alignment:
| Q |
18 |
caaatccggtttaaacccattcataaccgcctctgtcattgtcactgtcgcgttttttggtatctcttgcctcactgcattttgaacgaagccatccatc |
117 |
Q |
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| T |
2787772 |
caaatccggtttaaacccattcataaccgcctctgtcattgtcactgtcgcgttttttggtatctcttgcctcactgcattttgaacgaagccatccatc |
2787673 |
T |
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| Q |
118 |
attggaggcaacttttttgctgctgaggcttcgctccatggttctccaaaaatttgctcgtaaatatcttggatggaatgacccgggtctgggtcaacat |
217 |
Q |
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| T |
2787672 |
attggaggcaacttttttgctgctgaggcttcgctccatggttctccaaaaatttgctcgtaaatatcttggatggaatgacccgggtctgggtcaacat |
2787573 |
T |
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| Q |
218 |
agattgactggtcactgaatagaacccggttggagttggaatcagatgtggagattgagtttgactctgtaccgataacaccgttgattttcgggttgag |
317 |
Q |
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| T |
2787572 |
agattgactggtcactgaatagaactcggttcgagttggaatcagatgtggagattgagtttgactctgtaccgataacaccgttgattttcgggttgag |
2787473 |
T |
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| Q |
318 |
ggacttcatccaacccaacatgtggtcaaaagaacggttctcttgaaccaaaatgaccaccgttttgatggggtagctatgaatagtagtgcttgaattt |
417 |
Q |
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| T |
2787472 |
ggacttcatccaacccaacatgtggtcaaaagaacggttctcttgaaccaaaatgaccactgttttgatggggtagctatgaatagtagtgctagaattt |
2787373 |
T |
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| Q |
418 |
gtagtcattttttctaaaagtttccttttttgtgtggattttgttgataattctcaaatggaaataccgatccgagaaagtgagacatatatatactaca |
517 |
Q |
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| T |
2787372 |
gtagtcattttttctgaaagtttccttttttgtgtggattttgttgataattctcaaatggaaataccgatccgagaaagtgagacatatatatactaca |
2787273 |
T |
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| Q |
518 |
ctcaaatcatgtggtgaagttatattcttgg |
548 |
Q |
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| T |
2787272 |
ctcaaatcatgtggtgaagttatattcttgg |
2787242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 366 - 548
Target Start/End: Complemental strand, 2826904 - 2826717
Alignment:
| Q |
366 |
caaaatgaccaccgttttgatggggtagctatgaatagtagtgcttgaatttgtagtcattttttctaaaagtttcct----tttttgtgtggattttgt |
461 |
Q |
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||||||||||| |||||||||||| ||||||||||| ||||||| ||||||| ||||||||| | | ||| |||||| |||||||||||||||||| |
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| T |
2826904 |
caaaatgaccaacgttttgatgggatagctatgaat--tagtgctagaatttgaagtcattttct-tgaaaatttccttttgtttttgtgtggattttgt |
2826808 |
T |
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| Q |
462 |
tgataattctcaaatggaaataccgatccgagaaagtgagac----atatatatactacactcaaatcatgtggtgaagttatattcttgg |
548 |
Q |
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| T |
2826807 |
tgataattctcaaatgggaataccaatccaagaaagtgagacatatatatatatactacactcaaatcatgtggtgaagttatattcttgg |
2826717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 380 - 509
Target Start/End: Complemental strand, 7362626 - 7362498
Alignment:
| Q |
380 |
ttttgatggggtagctatgaatagtagtgcttgaatttgtagtcattttttctaaaagtttccttttttgtgtggattttgttgataattctcaaatgga |
479 |
Q |
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||||||||| ||||||| || ||||| |||| ||||||| ||||||||| | |||| ||| |||||| ||| |||||||||||||||||||||||| |
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| T |
7362626 |
ttttgatggtgtagctacgagtagtaatgctagaatttgaagtcattttcttgaaaattttgcttttta-tgtaaattttgttgataattctcaaatggg |
7362528 |
T |
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| Q |
480 |
aataccgatccgagaaagtgagacatatat |
509 |
Q |
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| T |
7362527 |
aataccatttcgagaaagtgaaacatatat |
7362498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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