View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_20 (Length: 541)
Name: NF17134_low_20
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 522
Target Start/End: Original strand, 28385166 - 28385682
Alignment:
| Q |
10 |
gtatgagagcagttcgatctagttcagactgttggaatgattgggtagtttgtgtaagtcgtcttagtgctggtcatgtggtcagaagctttcaggagag |
109 |
Q |
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| T |
28385166 |
gtatgagaacagttcgatctagttcagaccgttggaatgattgggtagtttgtgtaagtcgtcttagtgctggtcatgtggtcagaagctttcaggagag |
28385265 |
T |
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| Q |
110 |
ggtgcgtatatttgtacacgacctgaaccttgtttgaatgtt----tacttacagaaacatgtttgtcgatctcaatcttatttgcggtaagtcgagttg |
205 |
Q |
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| T |
28385266 |
ggtgtgtatatttgtacaccacctgaaccttgtttgaatgtttgtttacttacagaaacatgtttgtcgatctcaatcttatttgcggtaagtcgagttg |
28385365 |
T |
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| Q |
206 |
gatctgcgagaataaggaatcaataatgtttggtgtctgcaagtgttttgagcattttgtctctatagtcgggatctaagtgtcgggaaaactgacggaa |
305 |
Q |
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| T |
28385366 |
gatctgcgagaatcaggaatcaataatgtttggtgtctgcaagtgttttgagcattttgtctctgtagtcgggatctaagtgttgggaaaactgacggaa |
28385465 |
T |
|
| Q |
306 |
acataattgaccttgattataagagtaagttaatggtataatattggtttaggacaacctatttcattgtcatagtaatatggctaattattgacaaatt |
405 |
Q |
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| T |
28385466 |
acataattgaccttgattataagagtaagttaatggtataatattggtttaggacaacctatttcactgtcatagtaatatggctaattattgacaaatt |
28385565 |
T |
|
| Q |
406 |
gtgaaacttatctacctcaacctcttgtaaacgggatcataaggactgaaattgatcgaccttactagttattgtagtgtgcgaagtcaaaatggtaggc |
505 |
Q |
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| T |
28385566 |
gtgaaacttatctacctcaacctcttgtaaacgggatcataaggactgaaattgatcgaccttactagttattgtagtgtgcgaagtcaaaatggtaggc |
28385665 |
T |
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| Q |
506 |
ggtaatctctctatgtg |
522 |
Q |
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| T |
28385666 |
ggtaatctctctatgtg |
28385682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 26262195 - 26262047
Alignment:
| Q |
10 |
gtatgagagcagttcgatctagttcagactgttggaatgattgggtag-tttgtgtaagtcgtcttagtgctggtcatgtggtcagaagctttcaggaga |
108 |
Q |
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|||| ||||||||| |||||||||| |||||| || ||| |||||||| ||||| |||||| | |||||||||||||||| || |||| |||| |||| |
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| T |
26262195 |
gtattagagcagtttgatctagttcggactgtggggatggttgggtagttttgtttaagtcatgttagtgctggtcatgtcctccaaagccttcaagaga |
26262096 |
T |
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| Q |
109 |
gggtgcgtatatttgtacacgacctgaaccttgtttgaatgtttactta |
157 |
Q |
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| T |
26262095 |
tggtgtgtatttttgtagaacactcgaaccttgtttgaatgtttcctta |
26262047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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