View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_22 (Length: 509)
Name: NF17134_low_22
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Original strand, 24909900 - 24910379
Alignment:
| Q |
17 |
cttatgtcaatatataagttcaaataaactaatctaacaaaatataaggtggttcgagagatacaaactataactctgcaggttgacttaaagtttgacc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24909900 |
cttatgtcaatatataagttcaaataaactaatctaacaaaatataaggtggttcgagagatacaaactataactctgcagattgacttaaagtttgacc |
24909999 |
T |
|
| Q |
117 |
tgcatttaattatgctcagcaacatataaatcctggcgttgtaaatttggaatttatctactaatacacatggtcatggtttgacttttgactatatgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24910000 |
tgcatttaattatgctcagcaacatataaatcctggcgttgtaaatttggaatttatctactaatacacatggtcatggtttgacttttgactatatgag |
24910099 |
T |
|
| Q |
217 |
gaaagaatcaaaaagagaacaactatacctataattgtactactaaatgaagccataacatattcctaaagcttagtttctttcaacttaacactacctg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24910100 |
gaaagaatcaaaaagagaacaactatacctataattgtactactaaatgaagccataacatcttcctaaagcttagtttctttcaacttaacactacctg |
24910199 |
T |
|
| Q |
317 |
caacatagtactacattaaatttcctaagctccaaaaccaagattaagttgcaacccttacccggtcccaattccccaaataaaacatgcaacctatgaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24910200 |
caacatagtactacattaaatttcctaagctccaaaaccaagattaagttgcaacccttaccccgtcccaattccccaaataaaacatgcaacctatgaa |
24910299 |
T |
|
| Q |
417 |
gcgttgatacttgaaaaacagaaaagcatcattgtgtaacatgtatctgatatcgatacacatctgatacgtccctatgc |
496 |
Q |
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| T |
24910300 |
gcgctgatacttgaaaaacagaaaagcatcattgtgtaacatgtatctgatatcgatacacatctgatacgtccctatgc |
24910379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 24895568 - 24895926
Alignment:
| Q |
17 |
cttatgtcaatatataagttcaaataaactaatctaacaaaatataaggtggttcgagagatacaaactataactctgcaggttgacttaaagtttgacc |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24895568 |
cttatgtcaatatataagttaaaataaactaatctaacaaaatataaggtggttcgagagatacaaactataactctgcaggttgacttcaagtttgacc |
24895667 |
T |
|
| Q |
117 |
tgcatttaattatgctcagcaacatataaatcctggcgttgtaaatttggaatttatctactaatacacatggtcatggtttgacttttgactatatgag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24895668 |
tgcatttaattatgctcagcaacatataaatcctggcgttgtaaatttggaatttatctactaatacacatggtcatggtttgacttttgactatatgag |
24895767 |
T |
|
| Q |
217 |
gaaagaatcaaaaagagaacaactatacctataattgtactactaaatgaagccataacatattcctaaagcttagtttctttcaacttaacactacctg |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24895768 |
gaaagaatcaaaaagaggacaactatacctataattgtactactaaatgaagccataacatcttcctaaagcttagtttctttcaacttaacactacctg |
24895867 |
T |
|
| Q |
317 |
caacatagtactacattaaatttcctaagctccaaaaccaagattaagttgcaaccctt |
375 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||| |
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|
| T |
24895868 |
caacatagtactacattaaatttcctaagctccaaaatcaagactaagctgtaaccctt |
24895926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 434
Target Start/End: Original strand, 24895952 - 24896002
Alignment:
| Q |
384 |
ccaattccccaaataaaacatgcaacctatgaagcgttgatacttgaaaaa |
434 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
24895952 |
ccaattccccaaataaaacattcaacctatgaagcgcagatacttaaaaaa |
24896002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 2996685 - 2996721
Alignment:
| Q |
17 |
cttatgtcaatatataagttcaaataaactaatctaa |
53 |
Q |
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|||||||||||| |||||||||||||| ||||||||| |
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| T |
2996685 |
cttatgtcaataaataagttcaaataagctaatctaa |
2996721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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