View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_23 (Length: 501)
Name: NF17134_low_23
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 30 - 485
Target Start/End: Original strand, 3583249 - 3583704
Alignment:
| Q |
30 |
taatcatattattcaagcgtggggaagatctgtatggaatatatttatttctttttcgcaatatcataaataacatgtaaaagttatctatttcgctata |
129 |
Q |
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| T |
3583249 |
taatcatattattcaagcgtggggaagatctgtatggaatatatttatttctttttcgcaatatcataaataacatgtaaaagttatctatttcgctata |
3583348 |
T |
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| Q |
130 |
gatttacaattgcctaaaacgaagatccacacacagattcaaacaagaaattgatcttcaaagatcatgaaagttttgtcatatatttcaatgagaaatc |
229 |
Q |
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| T |
3583349 |
gatttacaattgcctaaaacgaagatccacacacagattcaaacaagaaattgatcttcaaagatcatgaaagttttgtcatatatttcaatgagaaatc |
3583448 |
T |
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| Q |
230 |
atgaccaaaacaaggagcgtgattctatatccagcaaatgaggaagtagatcttacatgggagaaagatgacttcactaaatagtttctggctctaaact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583449 |
atgaccaaaacaaggagcgtgattctatatccagcaaatgaggaagtagatcttacatgggagaaagatgacttcactaaatagtttctggctctaaact |
3583548 |
T |
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| Q |
330 |
gagaccaaaatacccaacacaaacaaatagggtagttcaagaaagtgcttcatttgttcaatgcaattatgctcttagaagtccaaagatcacaaatagc |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583549 |
gagaccaaaatacccaacacaaacaaatagggtagttcaagaaagtgcttcatttgttcaatgcaattatgctcttagaagtccaaagatcacaaatagc |
3583648 |
T |
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| Q |
430 |
ctcaatttttgtccctgatatatgtacaagaatatggtctgatggcaatcattact |
485 |
Q |
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| T |
3583649 |
ctcaatttttgtccctgatatatgtacaagaatatggtctgatggcaatcattact |
3583704 |
T |
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