View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_24 (Length: 488)
Name: NF17134_low_24
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 79 - 362
Target Start/End: Complemental strand, 3222081 - 3221787
Alignment:
| Q |
79 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtagctaggtagcaagtcaaaggagaggcaaacagacgaaaatga |
178 |
Q |
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| T |
3222081 |
caagtgatgagtagacatgatgtgtgtgttgataggtggaacttgggagtttaaggtag----gtagcaagtcaaaggagaggcaaacagacgaaaatga |
3221986 |
T |
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| Q |
179 |
catctctaaagattcccactaatggatgaatggcatatttcgaactacttgagattctttcttccataatattatatatagtatgtgttttgttttcagt |
278 |
Q |
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| T |
3221985 |
catctctaaagattcccactaatggatgaatggcatatttcaaactacttgagattcttccttcc---atattatatatagtatgtgttttgttttcagt |
3221889 |
T |
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| Q |
279 |
ggctgccttaacatggacgcacg------------------tttatagcttctccattttcacggtaaaatgcatcaaaattagcagtgaaatgtgtatt |
360 |
Q |
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| T |
3221888 |
ggctgccttaacatggacgcacgttctgttagaagctacaatttatagcttctccattttcacagtaaaatgcatcaaaatttgcagtgaaatgtgtatt |
3221789 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 3186435 - 3186498
Alignment:
| Q |
151 |
caaaggagaggcaaacagacgaaaatgacatctctaaagattcccactaatggatgaatggcat |
214 |
Q |
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| T |
3186435 |
caaaggagaggcaaagagacagaaatgacttctcttgagattcccactaatggatgcatggcat |
3186498 |
T |
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