View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_27 (Length: 477)
Name: NF17134_low_27
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 43799960 - 43799589
Alignment:
| Q |
1 |
atgtccaagaaaatttgtaaagaaacaccgcacaaacgggcaactacatttcataaggctaaaaaataattatccccaagccatacaagcatgctttgtt |
100 |
Q |
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| T |
43799960 |
atgtccaacacaatttgtaaagaaacactgcacaaacgggcaactacatttcataaggctaaaaaatacttatccccaagccatacaagcatgctttgtt |
43799861 |
T |
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| Q |
101 |
cacacaaaaatttaaacaaaatccaaataatcattacaagaattaattcatatctttaannnnnnnngacaattaattcaaatctctattaaatttgaaa |
200 |
Q |
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| T |
43799860 |
cacacaaaaatttaaacaaaatccaaa-aat-----------ttaattcatatctttaattttttttgacaattaattcaaatctctattaaatttgaaa |
43799773 |
T |
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| Q |
201 |
gaacaatctacaaaaaatattcataatccatgaatcatgattcaatgtacaataatttgttcacatatatcataaacaaaattcaatccacatcactttc |
300 |
Q |
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| T |
43799772 |
gaacaatctacaaaaaatattcataatccatgaatcatgattcaatgtacaataatttgttcacatgtatcataaacaaaattcaatccacatcactttc |
43799673 |
T |
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| Q |
301 |
acaaagccaaacaacaactgatcaaaaacttgattaaaactaccaaatcaaatatccaaacattgcattgacaaaatgatcatc |
384 |
Q |
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| T |
43799672 |
acaaagccaaacaacaactgatcaaaaacttgattaaaactaccaaatcaaatatccaaacattgcattgacaaaatgatcatc |
43799589 |
T |
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