View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_29 (Length: 474)
Name: NF17134_low_29
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 981033 - 980577
Alignment:
| Q |
1 |
acgaaatggtttgttctaatgtg-agaatcatattttggttgtatttttgcaaatttagtttcaggttacctaccatactataactttttctttgcttta |
99 |
Q |
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| T |
981033 |
acgaaatggtt-gttccaatgtgtaaaatcatattttggtagtatttttgcaaatttagtttcaggttacctatcatactctaactttttctttgcttta |
980935 |
T |
|
| Q |
100 |
acataatgtgataggagacagatttgagaagacccatttgtcgagctgaggttatagtgacaacttggttaaggaaagacagaacctattcaactaaata |
199 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |
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| T |
980934 |
acataatatgataggagacagaattgagaagacccatttgtcgagctgaggttatagtgacaacttggttgaagaaagacggaacctattcaactaaata |
980835 |
T |
|
| Q |
200 |
tgcagaaaacatggttgtaagtttgtatagctttttt--acccaattgtaggtacctctgaagtttgatattacatattgtatatatttgacttacactt |
297 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
980834 |
tgcagaaaacatggttgtaagtttgtatagattttttttacccagttgtaggtacctctgaagtttgatattacatattgtatatatttaacttacacat |
980735 |
T |
|
| Q |
298 |
tgtaaattaaaaacatattcgttattgttttcacaaacaaccctgcacattggcttttccttggcacctagaaaatatacagttgtgaattgtttgatgc |
397 |
Q |
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| T |
980734 |
tgtaaattaaaaacatattagttgttgttttcacaaacaaccctgcacattggcttttccctggcacctagaaaatatacagttgtgaattgtttgatgc |
980635 |
T |
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| Q |
398 |
aaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
455 |
Q |
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| T |
980634 |
aaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
980577 |
T |
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 27146762 - 27146690
Alignment:
| Q |
383 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146762 |
tgaattgtttgatgcaaaatgcaattatgcaagtacctagaaatatttataggttcaactagagagctctaga |
27146690 |
T |
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