View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17134_low_30 (Length: 471)
Name: NF17134_low_30
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_30 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold1036 (1 HSPs) |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 3565145 - 3564695
Alignment:
| Q |
14 |
catgaagaaatcagaaatgcagtgtttagcttgaacaaagaaagtgctccagggccagatggtttcggggcctttttcttccaaacatattgggatatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565145 |
catgaagaaatcagaaatgcagtgtttagcttgaacaaagaaagtgctccagggccagatggtttcggggcctttttcttccaaacatattgggatatag |
3565046 |
T |
|
| Q |
114 |
tccaaagagaagtgattgatgctgtgttacaattttttacatctggatggttacttccaaactacaatgccaacatcttgattctcattccaaaatccaa |
213 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565045 |
ttcaaagagaagtgattgatgctgtgttacaattttttacatctggatggttacttccaaactacaatgccaacatcttgattctcattccaaaatccaa |
3564946 |
T |
|
| Q |
214 |
caatgctgacacaatagagcaatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3564945 |
caatgctgacacaatagagcaatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattctt |
3564846 |
T |
|
| Q |
314 |
cctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaaaattgtctttgtttacccttagaagctattaatcttctccataaga |
413 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
3564845 |
cctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaagattgtctttgtttagccttagaagctattaatcttctacataaga |
3564746 |
T |
|
| Q |
414 |
agtcatatgcagggaacagtgctttgaaaattgatattaccaaagcctttg |
464 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3564745 |
agtcatatgcagggaacattgctttgaaaaatgatattaccaaagcctttg |
3564695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 464
Target Start/End: Complemental strand, 9750948 - 9750813
Alignment:
| Q |
329 |
aagaaccaaaaaggctttattcagggaaggaatataaaaaattgtctttgtttacccttagaagctattaatcttctccataagaagtcatatgcaggga |
428 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| | || |||||||| | | |||||| || || | ||| ||||||||| | |||||||||| |
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|
| T |
9750948 |
aagaatcaaaaaggctttattcagggaagagatataaaagactgattttgtttagcttcagaagccataaaccatcttcataagaagacttatgcaggga |
9750849 |
T |
|
| Q |
429 |
acagtgctttgaaaattgatattaccaaagcctttg |
464 |
Q |
| |
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||| | | ||||||||| ||||||||||| |||| |
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|
| T |
9750848 |
acatagttctgaaaattgtcattaccaaagcttttg |
9750813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 139228 - 138778
Alignment:
| Q |
14 |
catgaagaaatcagaaatgcagtgtttagcttgaacaaagaaagtgctccagggccagatggtttcggggcctttttcttccaaacatattgggatatag |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
139228 |
catgaagaaatcagaaatgcagtgtttagcttgaacaaagaaagtgctccaaggccagatggtttcagggcctttttcttccaaacatattgggatatag |
139129 |
T |
|
| Q |
114 |
tccaaagagaagtgattgatgctgtgttacaattttttacatctggatggttacttccaaactacaatgccaacatcttgattctcattccaaaatccaa |
213 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
139128 |
ttcaaagagaagtgattgatgctgtgttacaattttttacatctggatggttacttccaaactacaatgcaaacatcttgattctcattccaaaatccaa |
139029 |
T |
|
| Q |
214 |
caatgctgacacaatagagcaatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattctt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
139028 |
taatgctgacacaatagagcaatttagaccaattgcaatggccaaattcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattctt |
138929 |
T |
|
| Q |
314 |
cctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaaaattgtctttgtttacccttagaagctattaatcttctccataaga |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
138928 |
cctacaattatctcaaagaaccaaaaaggctttattcagggaaggaatataaaagattgtctttgtttagcctcagaagctattaatcttctccataaga |
138829 |
T |
|
| Q |
414 |
agtcatatgcagggaacagtgctttgaaaattgatattaccaaagcctttg |
464 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
138828 |
agtcatatgcagggaacattgctttgaaaattgatattaccaaagcctttg |
138778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 16488111 - 16488260
Alignment:
| Q |
230 |
gagcaatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattcttcctacaattatctcaa |
329 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| | ||| |||||||| || |||||||||| |
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|
| T |
16488111 |
gagcaatacagacccattgccatggccaacttcaaattcaaggttatttccaagattattgctgacagacttgcaagtattcttccaactattatctcaa |
16488210 |
T |
|
| Q |
330 |
agaaccaaaaaggctttattcagggaaggaatataaaaaattgtctttgt |
379 |
Q |
| |
|
|| |||||||| || ||| | ||||| ||||| || ||||||||||| |
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| T |
16488211 |
gcaatcaaaaaggtttcattaaaggaagaaatattaaggattgtctttgt |
16488260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 379
Target Start/End: Original strand, 28714488 - 28714628
Alignment:
| Q |
239 |
agaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaaattcttcctacaattatctcaaagaaccaaa |
338 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| || ||||| ||||| ||||||||||| | ||| |||||||| || |||||||||| || |||| |
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|
| T |
28714488 |
agacccattgccatggccaacttcaaattcaaggttatttccaagattattgctgacagacttgcaagtattcttccaactattatctcaagcaatcaaa |
28714587 |
T |
|
| Q |
339 |
aaggctttattcagggaaggaatataaaaaattgtctttgt |
379 |
Q |
| |
|
|||| || ||| | ||||| ||||| || ||||||||||| |
|
|
| T |
28714588 |
aaggtttcattaaaggaagaaatattaaggattgtctttgt |
28714628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 33816930 - 33816982
Alignment:
| Q |
236 |
tttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcat |
288 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||| || |||||||| |
|
|
| T |
33816930 |
tttagaccaattgcaatggccaatattaaattcaaaatcatctccaagatcat |
33816982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 303
Target Start/End: Original strand, 17448333 - 17448419
Alignment:
| Q |
217 |
tgctgacacaatagagcaatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagc |
303 |
Q |
| |
|
|||||||||||| || || |||||||||||||| |||| || |||||||| ||| ||||||||||||| || ||| |||| ||||| |
|
|
| T |
17448333 |
tgctgacacaatggatcagtttagaccaattgctatggaaaatttcaaatttaaaatcatttcaaagataatagctaacagattagc |
17448419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1036
Description:
Target: scaffold1036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 2812 - 2670
Alignment:
| Q |
167 |
cttccaaactacaatgccaacatcttgattctcattccaaaatccaacaatgctgacacaatagagcaatttagaccaattgcaatggccaacttcaaat |
266 |
Q |
| |
|
||||| || ||||||||||||| || | |||||||||||| | | ||||| ||||| || || ||||||||||| || || ||||| |||||||| | |
|
|
| T |
2812 |
cttcccaattacaatgccaacacaatggtactcattccaaaaactacaaatgcagacactatggatcaatttagacctatagctatggcaaacttcaagt |
2713 |
T |
|
| Q |
267 |
tcaaagtcatttcaaagatcattgctgacaggttagcacaaat |
309 |
Q |
| |
|
|||| ||||||| || || || ||||| |||||||| ||||| |
|
|
| T |
2712 |
tcaagatcatttctaaaattatagctgataggttagctcaaat |
2670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 28344 - 28418
Alignment:
| Q |
233 |
caatttagaccaattgcaatggccaacttcaaattcaaagtcatttcaaagatcattgctgacaggttagcacaa |
307 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| || ||| || | || |||||| |||| ||||| ||||||||| |
|
|
| T |
28344 |
caatatagaccaattgcaatggccaatttcaagtttaaaatcttgtccaagatccttgcagacagattagcacaa |
28418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 23111374 - 23111428
Alignment:
| Q |
57 |
gtgctccagggccagatggtttcggggcctttttcttccaaacatattgggatat |
111 |
Q |
| |
|
||||||||||||||||||| ||||| ||| |||||| ||||| ||||||||||| |
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|
| T |
23111374 |
gtgctccagggccagatggattcggtgccagtttctttcaaacctattgggatat |
23111428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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