View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17134_low_31 (Length: 462)
Name: NF17134_low_31
Description: NF17134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17134_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 445
Target Start/End: Original strand, 47059064 - 47059495
Alignment:
| Q |
14 |
aaatatgaaactataaaccaactccttgcaaagacaaaattccatctctgtcgtcacaccactgcaatcactgcctttgaagctggattttacacagaag |
113 |
Q |
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| T |
47059064 |
aaatatgaaactataaaccaactccttgcaaagacaaaactccatctcagtcatcgcaccactgcaatcactgcctttgaagctggattttacacagaag |
47059163 |
T |
|
| Q |
114 |
ccatccgacacctctcaaaaatcatagacagctttggcactcctcaagcattccttgccgaatgctacatgctaagagccttagcgtatcgttctgctag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47059164 |
ccatccgacacctctcaaaaatcatagacagctttggcactcctcaagcattccttgccgaatgctacatgctaagagccttagcgtatcgttctgctag |
47059263 |
T |
|
| Q |
214 |
tagaattgctgattcaatagctgattgtaacagaacgttgtcattggaccccaaatgtttcaatgctcttgaagctagagcatccattttagaatctatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47059264 |
tagaattgctgattcaatagctgattgtaacagaacgttgtcattggaccccaaatgtttcaatgctcttgaagctagagcatccattttagaatctatt |
47059363 |
T |
|
| Q |
314 |
cattgttatcatgattgcattcgcgatcttgaacgcttgaagttgttatacaacatgattcttcatgatcacgaactctttgattctgtatggaaaccct |
413 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47059364 |
cattgttatcatgattgcattcacgatcttgagcgcttgaagttgttatacaacatgattcttcatgatcacgaactctttgattctgcatggaaaccct |
47059463 |
T |
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| Q |
414 |
gcaacattcgctatgatgagattcctaagaag |
445 |
Q |
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| T |
47059464 |
gcaacattcgctatgatgagattcctaagaag |
47059495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 307
Target Start/End: Original strand, 39109914 - 39110068
Alignment:
| Q |
153 |
ctcctcaagcattccttgccgaatgctacatgctaagagccttagcgtatcgttctgctagtagaattgctgattcaatagctgattgtaacagaacgtt |
252 |
Q |
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||||||||| ||||||||| ||||||||||||| ||||||| || | ||||||||| ||||||||||||| ||||| ||||||||||||||||| | |
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| T |
39109914 |
ctcctcaaggattccttgcagaatgctacatgcatagagcctctgcttttcgttctgcaggtagaattgctgactcaattgctgattgtaacagaacact |
39110013 |
T |
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| Q |
253 |
gtcattggaccccaaatgtttcaatgctcttgaagctagagcatccattttagaa |
307 |
Q |
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| T |
39110014 |
atcattagaccctacatgtatccaagcactggaagctagagcttcaattctagaa |
39110068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 11725965 - 11726040
Alignment:
| Q |
213 |
gtagaattgctgattcaatagctgattgtaacagaacgttgtcattggaccccaaatgtttcaatgctcttgaagct |
289 |
Q |
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||||||||| ||||| ||||| | |||||| |||||||||||| |||| |||||||||||| |||| ||| ||||| |
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| T |
11725965 |
gtagaattgttgatttaatagtttgttgtaaaagaacgttgtcaatgga-cccaaatgtttccatgcacttaaagct |
11726040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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